Evidence map›Paper›PMID 20727850›Full record

ArticleBiochimica et biophysica acta2011

Secondary structure, dynamics, and architecture of the p7 membrane protein from hepatitis C virus by NMR spectroscopy.

Gabriel A Cook, Stanley J Opella

Abstract read
In one paragraph

Article in Biochimica et biophysica acta, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 56 citations in OpenAlex.

  1. Review
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  7. Review
  8. Targeting the Channel Activity of Viroporins.Advances in protein chemistry and structural biology · 2016
    Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Membrane protein structure from rotational diffusion.Biochimica et biophysica acta · 2015
    Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Helical membrane protein conformations and their environment.European biophysics journal : EBJ · 2013
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Gabriel A CookDepartment of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA 92093, USA.
Stanley J Opella
University of California San Diego · US

Funding

RESOURCE FOR SOLID STATE NMR OF PROTEINSP41EB002031 · NIBIB · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI OPELLA, STANLEY J · 2003 to 2018
$16.3M
Structure, Dynamics, and Functions of the Viroporins Vpu from HIV and p7 from HCVR01GM066978 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI OPELLA, STANLEY J · 2003 to 2016
$3.5M
Membrane Protein Structures:Phospholipid Bilayers (RMI)R01GM075877 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI OPELLA, STANLEY J · 2005 to 2009
$1.4M
NIBIB NIH HHS P41 EB002031NIBIB NIH HHS P41EB002031NIGMS NIH HHS R01 GM066978NIGMS NIH HHS R01 GM075877
6 · The paper itself

Abstract

P7 is a small membrane protein that is essential for the infectivity of hepatitis C virus. Solution-state NMR experiments on p7 in DHPC micelles, including hydrogen/deuterium exchange, paramagnetic relaxation enhancement and bicelle 'q-titration,' demonstrate that the protein has a range of dynamic properties and distinct structural segments. These data along with residual dipolar couplings yield a secondary structure model of p7. We were able to confirm previous proposals that the protein has two transmembrane segments with a short interhelical loop containing the two basic residues K33 and R35. The 63-amino acid protein has a remarkably complex structure made up of seven identifiable sections, four of which are helical segments with different tilt angles and dynamics. A solid-state NMR two-dimensional separated local field spectrum of p7 aligned in phospholipid bilayers provided the tilt angles of two of these segments. A preliminary structural model of p7 derived from these NMR data is presented.

Indexed as

Protein Structure, SecondaryDeuterium Exchange MeasurementDeuterium OxideDimyristoylphosphatidylcholineHepacivirusMagnetic Resonance SpectroscopyModels, ChemicalModels, MolecularPhospholipid EthersViral ProteinsViroporin ProteinsWater1,2-dihexadecyl-sn-glycero-3-phosphocholineDeuterium OxideDimyristoylphosphatidylcholinep7 protein, Hepatitis C virusPhospholipid EthersViral ProteinsViroporin ProteinsWater

Identifiers

PMID20727850
PMCPMC3046219
OpenAlexW1970687634

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.