Evidence map›Paper›PMID 20725729›Full record

ArticleJournal of comparative physiology. A, Neuroethology, sensory, neural, and behavioral physiology2010

On visual pigment templates and the spectral shape of invertebrate rhodopsins and metarhodopsins.

Doekele G Stavenga

Open access · hybridAbstract readComparative Study
In one paragraph

Article in Journal of comparative physiology. A, Neuroethology, sensory, neural, and behavioral physiology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
0.8field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 69 citations in OpenAlex.

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  7. Polarized iridescence of the tropical carpenter bee, Xylocopa latipes.Journal of comparative physiology. A, Neuroethology, sensory, neural, and behavioral physiology · 2023
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  8. Circadian rhythm entrainment of the jewel wasp,Proceedings. Biological sciences · 2023
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  14. Automated methods for efficient and accurate electroretinography.Journal of comparative physiology. A, Neuroethology, sensory, neural, and behavioral physiology · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author at 1 institution in 1 country.

Doekele G StavengaDepartment of Neurobiophysics, University of Groningen, Groningen, The Netherlands. D.G.Stavenga@rug.nl
University of Groningen · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The absorbance spectra of visual pigments can be approximated with mathematical expressions using as single parameter the absorbance peak wavelength. A comparison of the formulae of Stavenga et al. in Vision Res 33:1011-1017 (1993) and Govardovskii et al. in Vis Neurosci 17:509-528 (2000) applied to a number of invertebrate rhodopsins reveals that both templates well describe the normalized α-band of rhodopsins with peak wavelength > 400 nm; the template spectra are virtually indistinguishable in an absorbance range of about three log units. The template formulae of Govardovskii et al. in Vis Neurosci 17:509-528 (2000) describe the rhodopsin spectra better for absorbances below 10(-3). The template predicted spectra deviate in the ultraviolet wavelength range from each other as well as from measured spectra, preventing a definite conclusion about the spectral shape in the wavelength range <400 nm. The metarhodopsin spectra of blowfly and fruitfly R1-6 photoreceptors derived from measured data appear to be virtually identical. The established templates describe the spectral shape of fly metarhodopsin reasonably well. However, the best fitting template spectrum slightly deviates from the experimental spectra near the peak and in the long-wavelength tail. Improved formulae for fitting the fly metarhodopsin spectra are proposed.

Indexed as

Retinal PigmentsRhodopsinSensory RhodopsinsAnimalsDipteraDrosophilaModels, TheoreticalPhotoreceptor CellsSpectrum AnalysismetarhodopsinsRetinal PigmentsRhodopsinSensory Rhodopsins

Identifiers

PMID20725729
PMCPMC2962788
OpenAlexW2017713603

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.