Evidence map›Paper›PMID 20724388›Full record

ArticleMicrobiology (Reading, England)2010

Telomere position effect is regulated by heterochromatin-associated proteins and NkuA in Aspergillus nidulans.

Jonathan M Palmer, Sandeep Mallaredy, Dustin W Perry, James F Sanchez, Jeffrey M Theisen, Edyta Szewczyk, Berl R Oakley, Clay C C Wang, Nancy P Keller, Peter M Mirabito

Open access · greenAbstract read
In one paragraph

Article in Microbiology (Reading, England), 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 28 citations in OpenAlex.

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  6. The Different Roles ofFrontiers in microbiology · 2016
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  17. The chromatin code of fungal secondary metabolite gene clusters.Applied microbiology and biotechnology · 2012
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 1 country.

Jonathan M PalmerDepartment of Plant Pathology, University of Wisconsin, Madison, WI 53706, USA.
Sandeep MallaredyDepartment of Biology, University of Kentucky, Lexington, KY 40506, USA.
Dustin W PerryDepartment of Biology, University of Kentucky, Lexington, KY 40506, USA.
James F SanchezSchool of Pharmacy, University of Southern California, Los Angeles, CA 90089-9023, USA.
Jeffrey M TheisenDepartment of Medical Microbiology and Immunology, University of Wisconsin, Madison, WI 53706, USA.
Edyta SzewczykDepartment of Molecular Genetics, Ohio State University, 484 West 12th Avenue, Columbus, OH 43210, USA.
Berl R OakleyDepartment of Molecular Biosciences, University of Kansas, Lawrence, KS 66045, USA.
Clay C C WangSchool of Pharmacy, University of Southern California, Los Angeles, CA 90089-9023, USA.
Nancy P KellerDepartment of Bacteriology, University of Wisconsin, Madison, WI 53706, USA.
Peter M MirabitoDepartment of Biology, University of Kentucky, Lexington, KY 40506, USA.
University of Kentucky · USUniversity of Wisconsin–Madison · USUniversity of Southern California · USThe Ohio State University · USUniversity of Kansas · US

Funding

Molecular Genetic Mining of the Aspergillus Nidulans Secondary MetabolomeP01GM084077 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI OAKLEY, BERL RAY · 2008 to 2012
$5.4M
THE MOLECULAR BIOLOGY OF ORGNELLAR TRANSLOCATIONR01GM031837 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI OAKLEY, BERL RAY · 1985 to 2009
$2.9M
NIGMS NIH HHS P01 GM084077NIGMS NIH HHS P01GM084077NIGMS NIH HHS R01 GM031837NIGMS NIH HHS R01GM031837PHS HHS 1 R01 AL065728-01
6 · The paper itself

Abstract

Gene-silencing mechanisms are being shown to be associated with an increasing number of fungal developmental processes. Telomere position effect (TPE) is a eukaryotic phenomenon resulting in gene repression in areas immediately adjacent to telomere caps. Here, TPE is shown to regulate expression of transgenes on the left arm of chromosome III and the right arm of chromosome VI in Aspergillus nidulans. Phenotypes found to be associated with transgene repression included reduction in radial growth and the absence of sexual spores; however, these pleiotropic phenotypes were remedied when cultures were grown on media with appropriate supplementation. Simple radial growth and ascosporogenesis assays provided insights into the mechanism of TPE, including a means to determine its extent. These experiments revealed that the KU70 homologue (NkuA) and the heterochromatin-associated proteins HepA, ClrD and HdaA were partially required for transgene silencing. This study indicates that TPE extends at least 30 kb on chromosome III, suggesting that this phenomenon may be important for gene regulation in subtelomeric regions of A. nidulans.

Indexed as

Gene Expression Regulation, FungalAntigens, NuclearAspergillus nidulansDNA-Binding ProteinsFungal ProteinsGene SilencingHeterochromatinKu AutoantigenTelomereAntigens, NuclearDNA-Binding ProteinsFungal ProteinsHeterochromatinKu Autoantigen

Identifiers

PMID20724388
PMCPMC3068700
OpenAlexW2161003074

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.