Evidence map›Paper›PMID 20721060›Full record

ArticleOptics express2010

Dynamic ray tracing for modeling optical cell manipulation.

Ihab Sraj, Alex C Szatmary, David W M Marr, Charles D Eggleton

Abstract read
In one paragraph

Article in Optics express, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Cell elongation via intrinsic antipodal stretching forces.Physical review. E, Statistical, nonlinear, and soft matter physics · 2012
    Article
  3. Erythrocyte deformation in high-throughput optical stretchers.Physical review. E, Statistical, nonlinear, and soft matter physics · 2012
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Ihab SrajDepartment of Mechanical Engineering, University of Maryland Baltimore County, Baltimore, Maryland 21250, USA.
Alex C Szatmary
David W M Marr
Charles D Eggleton

Funding

High-Throughput Cell Mechanical Property Testing for Label-Free AssayingR01AI079347 · NIAID · COLORADO SCHOOL OF MINES · PI EGGLETON, CHARLES DIONISIO, MARR, DAVID WM · 2009 to 2012
$1.3M
NIAID NIH HHS R01 AI079347NIAID NIH HHS R01 AI079347-01
6 · The paper itself

Abstract

Current methods for predicting stress distribution on a cell surface due to optical trapping forces are based on a traditional ray optics scheme for fixed geometries. Cells are typically modeled as solid spheres as this facilitates optical force calculation. Under such applied forces however, real and non-rigid cells can deform, so assumptions inherent in traditional ray optics methods begin to break down. In this work, we implement a dynamic ray tracing technique to calculate the stress distribution on a deformable cell induced by optical trapping. Here, cells are modeled as three-dimensional elastic capsules with a discretized surface with associated hydrodynamic forces calculated using the Immersed Boundary Method. We use this approach to simulate the transient deformation of spherical, ellipsoidal and biconcave capsules due to external optical forces induced by a single diode bar optical trap for a range of optical powers.

Indexed as

CellsModels, BiologicalOptical TweezersStress, MechanicalAnimalsComputer SimulationHydrodynamicsMicromanipulationSkates, Fish

Identifiers

PMID20721060
PMCPMC3408928

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.