Evidence map›Paper›PMID 20720004›Full record

ArticleThe Journal of biological chemistry2010

Activator-dependent p300 acetylation of chromatin in vitro: enhancement of transcription by disruption of repressive nucleosome-nucleosome interactions.

Heather J Szerlong, Jessica E Prenni, Jennifer K Nyborg, Jeffrey C Hansen

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 62 citations in OpenAlex.

  1. Article
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  5. Review
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  7. Review
  8. Milestones in transcription and chromatin published in theThe Journal of biological chemistry · 2019
    Review
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  10. Article
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  17. Review
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  19. Article
  20. Epigenomics of macrophages.Immunological reviews · 2014
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Heather J SzerlongDepartment of Biochemistry and Molecular Biology, Colorado State University, Fort Collins, Colorado 80523-1870, USA.
Jessica E Prenni
Jennifer K Nyborg
Jeffrey C Hansen
Colorado State University · US

Funding

project 3P01GM088409 · NIGMS · COLORADO STATE UNIVERSITY · PI NYBORG, JENNIFER K. · 2010 to 2014
$7.3M
TRANSCRIPTIONAL REGULATION BY THE HTLV-I TAX PROTEINR01CA055035 · NCI · COLORADO STATE UNIVERSITY-FORT COLLINS · PI NYBORG, JENNIFER K. · 1994 to 2013
$3.9M
CHROMATIN STRUCTURE AND STABILITY IN THE SOLUTION STATER01GM045916 · NIGMS · UNIVERSITY OF TEXAS HLTH SCI CTR SAN ANT · PI HANSEN, JEFFREY C · 1996 to 2012
$3.3M
CHROMATIN STRUCTURE AND STABILITY IN THE SOLUTION STATER29GM045916 · NIGMS · UNIVERSITY OF TEXAS HLTH SCI CTR SAN ANT · PI HANSEN, JEFFREY C · 1991 to 1995
–
TAX1 REGULATION OF HTLV-I TRANSCRIPTION AND REPLICATIONR55CA055035 · NCI · COLORADO STATE UNIVERSITY-FORT COLLINS · PI NYBORG, JENNIFER K. · 1991 to 1991
–
NCI NIH HHS CA055035NCI NIH HHS R01 CA055035NIGMS NIH HHS GM088409NIGMS NIH HHS GM45916NIGMS NIH HHS P01 GM088409NIGMS NIH HHS R01 GM045916
6 · The paper itself

Abstract

Condensation of chromatin into higher order structures is mediated by intra- and interfiber nucleosome-nucleosome interactions. Our goals in this study were to determine the impact specific activator-dependent histone acetylation had on chromatin condensation and to ascertain whether acetylation-induced changes in chromatin condensation were related to changes in RNA polymerase II (RNAPII) activity. To accomplish this, an in vitro model system was constructed in which the purified transcriptional activators, Tax and phosphorylated CREB (cAMP-response element-binding protein), recruited the p300 histone acetyltransferase to nucleosomal templates containing the human T-cell leukemia virus type-1 promoter sequences. We find that activator-dependent p300 histone acetylation disrupted both inter- and intrafiber nucleosome-nucleosome interactions and simultaneously led to enhanced RNAPII transcription from the decondensed model chromatin. p300 histone acetyltransferase activity had two distinct components: non-targeted, ubiquitous activity in the absence of activators and activator-dependent activity targeted primarily to promoter-proximal nucleosomes. Mass spectrometry identified several unique p300 acetylation sites on nucleosomal histone H3 (H3K9, H3K27, H3K36, and H3K37). Collectively, our data have important implications for understanding both the mechanism of RNAPII transcriptional regulation by chromatin and the molecular determinants of higher order chromatin structure.

Indexed as

Transcription, GeneticAcetylationAmino Acid SequenceAnimalsChromatinE1A-Associated p300 ProteinHistonesHumansMolecular Sequence DataNucleosomesPromoter Regions, GeneticRNA Polymerase IIChromatinE1A-Associated p300 ProteinEP300 protein, humanHistonesNucleosomesRNA Polymerase II

Identifiers

PMID20720004
PMCPMC2952196
OpenAlexW2140415204

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.