ArticleNucleic acids research2011
PmiRKB: a plant microRNA knowledge base.
Article in Nucleic acids research, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
27 citing papers in PubMed.
- DNA polymorphisms and NBMC plant biology · 2026Article
- Role of non-coding RNAs in quality improvement of horticultural crops: computational tools, databases, and algorithms for identification and analysis.Functional & integrative genomics · 2025Review
- Deciphering the impact of microRNAs in plant biology: a review of computational insights and experimental validation.Molecular biology reports · 2025Review
- The Usage of PmiREN (Plant miRNA ENcyclopedia).Methods in molecular biology (Clifton, N.J.) · 2025Article
- MicroRNA-mediated bioengineering for climate-resilience in crops.Bioengineered · 2021Review
- Interplay between miRNAs and lncRNAs: Mode of action and biological roles in plant development and stress adaptation.Computational and structural biotechnology journal · 2021Review
- Interactions and links among the noncoding RNAs in plants under stresses.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Review
- Research Tools for the Functional Genomics of Plant miRNAs During Zygotic and Somatic Embryogenesis.International journal of molecular sciences · 2020Review
- Review
- PmiREN: a comprehensive encyclopedia of plant miRNAs.Nucleic acids research · 2020Article
- MepmiRDB: a medicinal plant microRNA database.Database : the journal of biological databases and curation · 2019Article
- A comprehensive review of web-based resources of non-coding RNAs for plant science research.International journal of biological sciences · 2018Review
- Bioinformatics resources for deciphering the biogenesis and action pathways of plant small RNAs.Rice (New York, N.Y.) · 2017Review
- Non-coding RNAs and Their Roles in Stress Response in Plants.Genomics, proteomics & bioinformatics · 2017Review
- PlantCircNet: a database for plant circRNA-miRNA-mRNA regulatory networks.Database : the journal of biological databases and curation · 2017Article
- mRNA Decay of Most Arabidopsis miRNA Targets Requires Slicer Activity of AGO1.Plant physiology · 2016Article
- MicroRNAs As Potential Targets for Abiotic Stress Tolerance in Plants.Frontiers in plant science · 2016Review
- Role of bioinformatics in establishing microRNAs as modulators of abiotic stress responses: the new revolution.Frontiers in physiology · 2015Review
- PNRD: a plant non-coding RNA database.Nucleic acids research · 2015Article
- Construction and analysis of microRNA-transcription factor regulation network in Arabidopsis.IET systems biology · 2014Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
MicroRNAs (miRNAs), one type of small RNAs (sRNAs) in plants, play an essential role in gene regulation. Several miRNA databases were established; however, successively generated new datasets need to be collected, organized and analyzed. To this end, we have constructed a plant miRNA knowledge base (PmiRKB) that provides four major functional modules. In the 'SNP' module, single nucleotide polymorphism (SNP) data of seven Arabidopsis (Arabidopsis thaliana) accessions and 21 rice (Oryza sativa) subspecies were collected to inspect the SNPs within pre-miRNAs (precursor microRNAs) and miRNA-target RNA duplexes. Depending on their locations, SNPs can affect the secondary structures of pre-miRNAs, or interactions between miRNAs and their targets. A second module, 'Pri-miR', can be used to investigate the tissue-specific, transcriptional contexts of pre- and pri-miRNAs (primary microRNAs), based on massively parallel signature sequencing data. The third module, 'MiR-Tar', was designed to validate thousands of miRNA-target pairs by using parallel analysis of RNA end (PARE) data. Correspondingly, the fourth module, 'Self-reg', also used PARE data to investigate the metabolism of miRNA precursors, including precursor processing and miRNA- or miRNA*-mediated self-regulation effects on their host precursors. PmiRKB can be freely accessed at http://bis.zju.edu.cn/pmirkb/.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.