Evidence map›Paper›PMID 20718043›Full record

ArticleGenetic epidemiology2010

Variation in folate pathway genes contributes to risk of congenital heart defects among individuals with Down syndrome.

Adam E Locke, Kenneth J Dooley, Stuart W Tinker, Soo Yeon Cheong, Eleanor Feingold, Emily G Allen, Sallie B Freeman, Claudine P Torfs, Clifford L Cua, Michael P Epstein and 5 more

Abstract read
In one paragraph

Article in Genetic epidemiology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers, 8 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed, 8 pooled it
4.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 8 syntheses or guidelines pooled it, 84 citations in OpenAlex.

  1. Pooled it
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  8. [Turner syndrome and genetic polymorphism: a systematic review].Revista paulista de pediatria : orgao oficial da Sociedade de Pediatria de Sao Paulo
    Pooled it
  9. Article
  10. Observational
  11. Article
  12. Review
  13. Human Genetics of Atrioventricular Septal Defect.Advances in experimental medicine and biology · 2024
    Review
  14. Article
  15. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 7 institutions in 1 country.

Adam E LockeDepartment of Human Genetics, Emory University School of Medicine, Atlanta, Georgia, USA.
Kenneth J Dooley
Stuart W Tinker
Soo Yeon Cheong
Eleanor Feingold
Emily G Allen
Sallie B Freeman
Claudine P Torfs
Clifford L Cua
Michael P Epstein
Michael C Wu
Xihong Lin
George Capone
Stephanie L Sherman
Lora J H Bean
Emory University · USHarvard University · USUniversity of Pittsburgh · USChildren's Healthcare of Atlanta · USKennedy Krieger Institute · USNationwide Children's Hospital · USPublic Health Institute · US

Funding

CTSA INFRASTRUCTURE FOR PEDIATRIC RESEARCHUL1RR025008 · NCRR · EMORY UNIVERSITY · PI STEPHENS, DAVID S · 2007 to 2011
$29.0M
Atlanta Clinical and Translational Science Institute (ACTSI) RenewalUL1TR000454 · NCATS · EMORY UNIVERSITY · PI STEPHENS, DAVID S · 2012 to 2016
$25.8M
X LINKED NYSTAGMUS SYNDROME WITH FEATURES OF ALBINISMM01RR000039 · NCRR · EMORY UNIVERSITY · PI VACCARINO, VIOLA · 1985 to 2007
$21.3M
UW-FHCRC VARIATION DISCOVERY RESOURCEU01HL066682 · NHLBI · UNIVERSITY OF WASHINGTON · PI NICKERSON, DEBORAH A · 2000 to 2007
$19.1M
GRADUATE TRAINING IN BIOSTATISTICST32ES007142 · NIEHS · HARVARD UNIVERSITY (SCH OF PUBLIC HLTH) · PI Brent Andrew Coull · 1985 to 2026
$11.9M
TRISOMY 21: RISK FACTORS FOR CHROMOSOME NONDISJUNCTIONR01HD038979 · NICHD · EMORY UNIVERSITY · PI FEINGOLD, ELEANOR, SHERMAN, STEPHANIE L. · 2000 to 2013
$11.2M
UTILIZATION OF TRANSGENICS IN THE STUDY OF DOWN SYNDROMEP01HD024605 · NICHD · JOHNS HOPKINS UNIVERSITY · PI REEVES, ROGER H · 1989 to 2004
$8.2M
PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM008490 · NIGMS · EMORY UNIVERSITY · PI BOSS, JEREMY M. · 1993 to 2022
$8.0M
Genetic basis for congenital heart defectsR01HL083300 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI REEVES, ROGER H · 2007 to 2011
$5.6M
Novel Statistical Methods for Human Gene MappingR01HG003618 · NHGRI · EMORY UNIVERSITY · PI EPSTEIN, MICHAEL PHILIP · 2006 to 2010
$1.5M
Identifying Downs Syndrome Heart Defect Candidate GenesF32HD046337 · NICHD · EMORY UNIVERSITY · PI BEAN, LORA J · 2004 to 2006
$148k
NCATS NIH HHS UL1 TR000454NCRR NIH HHS M01 RR000039NCRR NIH HHS M01 RR00039NCRR NIH HHS UL1 RR025008NHGRI NIH HHS R01 HG003618NHLBI NIH HHS R01 HL083300NHLBI NIH HHS U01 HL066682NHLBI NIH HHS U01 HL66682NICHD NIH HHS F32 HD046337NICHD NIH HHS P01 HD024605NICHD NIH HHS P0 1HD24605NICHD NIH HHS R01 HD038979NICHD NIH HHS R01 HD38979NIEHS NIH HHS T32 ES007142NIGMS NIH HHS T32 GM008490
6 · The paper itself

Abstract

Cardiac abnormalities are one of the most common congenital defects observed in individuals with Down syndrome. Considerable research has implicated both folate deficiency and genetic variation in folate pathway genes with birth defects, including both congenital heart defects (CHD) and Down syndrome (DS). Here, we test variation in folate pathway genes for a role in the major DS-associated CHD atrioventricular septal defect (AVSD). In a group of 121 case families (mother, father, and proband with DS and AVSD) and 122 control families (mother, father, and proband with DS and no CHD), tag SNPs were genotyped in and around five folate pathway genes: 5,10-methylenetetrahyrdofolate reductase (MTHFR), methionine synthase (MTR), methionine synthase reductase (MTRR), cystathionine beta-synthase (CBS), and the reduced folate carrier (SLC19A1, RFC1). SLC19A1 was found to be associated with AVSD using a multilocus allele-sharing test. Individual SNP tests also showed nominally significant associations with odds ratios of between 1.34 and 3.78, depending on the SNP and genetic model. Interestingly, all marginally significant SNPs in SLC19A1 are in strong linkage disequilibrium (r(2)> or = 0.8) with the nonsynonymous coding SNP rs1051266 (c.80A>G), which has previously been associated with nonsyndromic cases of CHD. In addition to SLC19A1, the known functional polymorphism MTHFR c.1298A was over-transmitted to cases with AVSD (P=0.05) and under-transmitted to controls (P=0.02). We conclude, therefore, that disruption of the folate pathway contributes to the incidence of AVSD among individuals with DS.

Indexed as

Black PeopleCase-Control StudiesCausalityChromosomes, Human, Pair 21ComorbidityDown SyndromeFolic AcidGenetic Association StudiesGenetic VariationGenotypeHeart Defects, CongenitalHeart Septal DefectsHumansIncidencePolymorphism, Single NucleotideWhite PeopleFolic Acid

Identifiers

PMID20718043
PMCPMC3378053
OpenAlexW2102995490

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.