Evidence map›Paper›PMID 20717155›Full record

ReviewNature reviews. Genetics2010

Computational solutions to large-scale data management and analysis.

Eric E Schadt, Michael D Linderman, Jon Sorenson, Lawrence Lee, Garry P Nolan

Open access · greenAbstract readReview
In one paragraph

Review in Nature reviews. Genetics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 154 papers.

0numbers the graph read from it
0cells of the map it votes in
154citing papers in PubMed
19.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

154 citing papers in PubMed, 638 citations in OpenAlex.

  1. Review
  2. Article
  3. Advancing the Spatiotemporal Dimension of Wildlife-Pollution Interactions.Environmental science & technology letters · 2025
    Review
  4. Article
  5. Integrated data-driven biotechnology research environments.Database : the journal of biological databases and curation · 2025
    Review
  6. Article
  7. Article
  8. Article
  9. Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Big data in autism research: Methodological challenges and solutions.Autism research : official journal of the International Society for Autism Research · 2023
    Article
  15. Biocomputational Identification of sRNAs inIndian journal of microbiology · 2023
    Article
  16. Article
  17. Article
  18. Deep learning in bioinformatics.Turkish journal of biology = Turk biyoloji dergisi · 2023
    Article
  19. Article
  20. Article

94 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Eric E SchadtPacific Biosciences, Menlo Park, California 94025, USA. eschadt@pacificbiosciences.com
Michael D Linderman
Jon Sorenson
Lawrence Lee
Garry P Nolan
Pacific Biosciences (United States) · USStanford University · US

Funding

Software & Hardware Inference Engines for Automated Determination of Primary CellR01CA130826 · NCI · STANFORD UNIVERSITY · PI NOLAN, GARRY P · 2008 to 2011
$6.7M
NCI NIH HHS R01 CA130826NHLBI NIH HHS HHSN268201000034C
6 · The paper itself

Abstract

Today we can generate hundreds of gigabases of DNA and RNA sequencing data in a week for less than US$5,000. The astonishing rate of data generation by these low-cost, high-throughput technologies in genomics is being matched by that of other technologies, such as real-time imaging and mass spectrometry-based flow cytometry. Success in the life sciences will depend on our ability to properly interpret the large-scale, high-dimensional data sets that are generated by these technologies, which in turn requires us to adopt advances in informatics. Here we discuss how we can master the different types of computational environments that exist - such as cloud and heterogeneous computing - to successfully tackle our big data problems.

Indexed as

AnimalsComputational BiologyGenomicsHumansSequence Analysis, DNA

Identifiers

PMID20717155
PMCPMC3124937
OpenAlexW2023116290

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.