Evidence map›Paper›PMID 20716965›Full record

ArticleEpigenetics2010

Quantitative analysis of promoter methylation in exfoliated epithelial cells isolated from breast milk of healthy women.

Chung M Wong, Douglas L Anderton, Sallie Smith-Schneider, Megan A Wing, Melissa C Greven, Kathleen F Arcaro

Open access · hybridAbstract read
In one paragraph

Article in Epigenetics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed, 1 pooled it
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 1 synthesis or guideline pooled it, 37 citations in OpenAlex.

  1. The utility of breastmilk for genetic or genomic studies: a systematic review.Breastfeeding medicine : the official journal of the Academy of Breastfeeding Medicine · 2013
    Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Promoter methylation status ofTranslational lung cancer research · 2019
    Article
  11. Article
  12. Your DNA May Appear Older Than You Think.Journal of the National Cancer Institute · 2019
    Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Review
  20. Opportunities and challenges for selected emerging technologies in cancer epidemiology: mitochondrial, epigenomic, metabolomic, and telomerase profiling.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2013
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Chung M WongDepartment of Veterinary & Animal Science, University of Massachusetts at Amherst, MA, USA.
Douglas L Anderton
Sallie Smith-Schneider
Megan A Wing
Melissa C Greven
Kathleen F Arcaro
University of Massachusetts Amherst · USPioneer Valley Planning Commission · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Promoter methylation analysis of genes frequently silenced in breast cancer is a promising indicator of breast cancer risk, as these methylation events are thought to occur long before presentation of disease. The numerous exfoliated epithelial cells present in breast milk may provide the breast epithelial DNA needed for detailed methylation analysis and assessment of breast cancer risk. Fresh breast milk samples and health, lifestyle, and reproductive history questionnaires were collected from 111 women. Pyrosequencing analysis was conducted on DNA isolated from the exfoliated epithelial cells immunomagnetically separated from the total cell population in the breast milk of 102 women. A total of 65 CpG sites were examined in six tumor suppressor genes: PYCARD (also known as ASC or TMS1), CDH1, GSTP1, RBP1 (also known as CRBP1), SFRP1, and RASSF1. A sufficient quantity of DNA was obtained for meaningful analysis of promoter methylation; women donated an average of 86 ml of milk with a mean yield of 32,700 epithelial cells per ml. Methylation scores were in general low as expected of benign tissue, but analysis of outlier methylation scores revealed a significant relationship between breast cancer risk, as indicated by previous biopsy, and methylation score for several CpG sites in CDH1, GSTP1, SFRP1, and RBP1. Methylation of RASSF1 was positively correlated with women's age irrespective of her reproductive history. Promoter methylation patterns in DNA from breast milk epithelial cells can likely be used to assess breast cancer risk. Additional studies of women at high breast cancer risk are warranted.

Indexed as

DNA MethylationGenes, Tumor SuppressorPromoter Regions, GeneticAdultAge FactorsAntigens, CDBreastBreast NeoplasmsCadherinsCARD Signaling Adaptor ProteinsCpG IslandsCytoskeletal ProteinsEpithelial CellsFemaleGlutathione S-Transferase piHumansAntigens, CDCadherinsCARD Signaling Adaptor ProteinsCDH1 protein, humanCytoskeletal ProteinsGlutathione S-Transferase piGSTP1 protein, humanIntercellular Signaling Peptides and ProteinsMembrane ProteinsPYCARD protein, humanRASSF1 protein, humanRBP1 protein, humanRetinol-Binding Proteins, CellularSecreted Frizzled-Related ProteinsSFRP1 protein, humanTumor Suppressor Proteins

Identifiers

PMID20716965
PMCPMC3052848
OpenAlexW2079565561

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.