Evidence map›Paper›PMID 20714778›Full record

ReviewCellular and molecular life sciences : CMLS2010

Functions of disordered regions in mammalian early base excision repair proteins.

Muralidhar L Hegde, Tapas K Hazra, Sankar Mitra

Abstract readReview
In one paragraph

Review in Cellular and molecular life sciences : CMLS, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 68 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. When DNA-damage responses meet innate and adaptive immunity.Cellular and molecular life sciences : CMLS · 2024
    Review
  5. Article
  6. Review
  7. Lighting up Nobel Prize-winning studies with protein intrinsic disorder.Cellular and molecular life sciences : CMLS · 2022
    Review
  8. Conformational Rearrangements Regulating the DNA Repair Protein APE1.International journal of molecular sciences · 2022
    Article
  9. Article
  10. DNA Repair in Haploid Context.International journal of molecular sciences · 2021
    Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Muralidhar L HegdeDepartment of Biochemistry and Molecular Biology, University of Texas Medical Branch, 301 University Blvd, Galveston, TX 77555-1079, USA.
Tapas K Hazra
Sankar Mitra
The University of Texas Medical Branch at Galveston · US

Funding

Transcription-Coupled & Replication-Associated Excision RepairP01CA092584 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI John A. Tainer · 2001 to 2026
$89.6M
Synthetic Organic Chemistry CoreP30ES006676 · NIEHS · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI ELFERINK, CORNELIS JOHAN · 1995 to 2017
$21.7M
STRUCTURE AND REGULATION OF DNA REPAIR GENES OF MAMMALSR01CA053791 · NCI · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI MITRA, SANKAR · 1991 to 2011
$4.0M
Preferential single-strand break repair in the active genes of mammalian cellsR01NS073976 · NINDS · UNIVERSITY OF TEXAS MED BR GALVESTON · PI HAZRA, TAPAS K · 2012 to 2021
$3.3M
Repair of Oxidized Bases in Mammalian GenomesR01CA081063 · NCI · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI MITRA, SANKAR · 1999 to 2012
$3.1M
Repair of oxidative damage in mammalian genomesR01CA102271 · NCI · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI HAZRA, TAPAS K · 2005 to 2010
$1.4M
Polymorphic variants of human DNA glycosylase NEIL2 and lung cancer susceptibilitR21ES017353 · NIEHS · UNIVERSITY OF TEXAS MED BR GALVESTON · PI HAZRA, TAPAS K · 2009 to 2010
$415k
NCI NIH HHS P01 CA092584NCI NIH HHS P01 CA92586NCI NIH HHS R01 CA053791NCI NIH HHS R01 CA081063NCI NIH HHS R01 CA102271NCI NIH HHS R01 CA53791NCI NIH HHS R01 CA81063NIEHS NIH HHS P30 ES006676NIEHS NIH HHS P30 ES06676NIEHS NIH HHS R21 ES017353NINDS NIH HHS R01 NS073976
6 · The paper itself

Abstract

Reactive oxygen species, generated endogenously and induced as a toxic response, produce several dozen oxidized or modified bases and/or single-strand breaks in mammalian and other genomes. These lesions are predominantly repaired via the conserved base excision repair (BER) pathway. BER is initiated with excision of oxidized or modified bases by DNA glycosylases leading to formation of abasic (AP) site or strand break at the lesion site. Structural analysis by experimental and modeling approaches shows the presence of a disordered segment commonly localized at the N- or C-terminus as a characteristic signature of mammalian DNA glycosylases which is absent in their bacterial prototypes. Recent studies on unstructured regions in DNA metabolizing proteins have indicated their essential role in interaction with other proteins and target DNA recognition. In this review, we have discussed the unique presence of disordered segments in human DNA glycosylases, and AP endonuclease involved in the processing of glycosylase products, and their critical role in regulating repair functions. These disordered segments also include sites for posttranslational modifications and nuclear localization signal. The teleological basis for their structural flexibility is discussed.

Indexed as

DNA RepairAmino Acid SequenceAnimalsDNA Repair EnzymesHumansMolecular Sequence DataProtein ConformationDNA Repair Enzymes

Identifiers

PMID20714778
PMCPMC2996047
OpenAlexW2156858151

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.