Evidence map›Paper›PMID 20714161›Full record

ArticleHuman heredity2010

Using a pharmacokinetic model to relate an individual's susceptibility to alcohol dependence to genotypes.

Laura F Mustavich, Perry Miller, Kenneth K Kidd, Hongyu Zhao

Abstract read
In one paragraph

Article in Human heredity, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Mapping genes for drug chronotherapy.Drug discovery today · 2018
    Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Laura F MustavichInterdepartmental Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT 06520-8034, USA.
Perry Miller
Kenneth K Kidd
Hongyu Zhao

Funding

Yale Study Support Suite (YES3): Dashboard and Web Portal Software Supporting Research Workflow through integrated, customizable REDCap External ModulesP30AG021342 · NIA · YALE UNIVERSITY · PI Denise Esserman · 2002 to 2026
$37.9M
MEDICAL INFORMATICS RESEARCH TRAINING AT YALET15LM007056 · NLM · YALE UNIVERSITY · PI Mark Bender Gerstein, LUCILA OHNO-MACHADO · 1987 to 2026
$22.2M
STATISTICAL METHODS TO MAP GENES FOR COMPLEX TRAITSR01GM059507 · NIGMS · YALE UNIVERSITY · PI ZHAO, HONGYU · 1999 to 2013
$3.6M
CONTROLS FOR ASSOCIATION STUDIES OF ALCOHOLISMR01AA009379 · NIAAA · YALE UNIVERSITY · PI KIDD, KENNETH K. · 1992 to 2009
$2.7M
YALE BIOMEDICAL SUPERCOMPUTER: NEUROSCIENCES10RR019895 · NCRR · YALE UNIVERSITY · PI WILLIAMS, KENNETH ROBERT · 2004 to 2004
$1.6M
NCRR NIH HHS RR19895NCRR NIH HHS S10 RR019895NIAAA NIH HHS R01 AA009379NIA NIH HHS P30 AG021342NIA NIH HHS P30AG021342NIGMS NIH HHS GM59507NIGMS NIH HHS R01 GM059507NLM NIH HHS T15 LM007056NLM NIH HHS T15 LM07056
6 · The paper itself

Abstract

BACKGROUND/

aimsPopulation-based studies have successfully identified genes affecting common diseases, but have not provided a molecular mechanism. We describe an approach for alcohol dependence connecting a mechanistic model at the molecular level with disease risk at the population level, and investigate how this model implies statistical gene-gene interactions that affect disease risk.

methodsWe develop a pharmacokinetic model describing how genetic variations in ADH1B, ADH1C, ADH7, ALDH2, and TAS2R38 affect consumption behavior, and alcohol and acetaldehyde levels over time in various tissues of individuals with a particular genotype to predict their susceptibility to alcohol dependence.

resultsWe show that there is good agreement between the observed genotype/haplotype frequencies and those predicted by the model among cases and controls. Based on this framework, we show that we expect to observe statistical interactions among these genes for a reasonably large sample size when logistic regression models are used to relate genotype effects and disease risk.

conclusionOur model exemplifies mechanistic modeling of how genes interact to influence an individual's susceptibility to alcohol dependence. We anticipate that this general approach could also be applied to study other diseases at the molecular level.

Indexed as

Epistasis, GeneticHaplotypesModels, GeneticAcetaldehydeAlcohol DehydrogenaseAlcohol DrinkingAlcoholismAlcoholsAldehyde DehydrogenaseAllelesGenetic Association StudiesGenetic Predisposition to DiseaseHumansPolymorphism, Single NucleotideRegression AnalysisAcetaldehydeAlcohol DehydrogenaseAlcoholsAldehyde Dehydrogenase

Identifiers

PMID20714161
PMCPMC3164201

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.