Evidence map›Paper›PMID 20709902›Full record

ArticleJournal of bacteriology2010

AmrZ beta-sheet residues are essential for DNA binding and transcriptional control of Pseudomonas aeruginosa virulence genes.

Elizabeth A Waligora, Deborah M Ramsey, Edward E Pryor, Haiping Lu, Thomas Hollis, Gina P Sloan, Rajendar Deora, Daniel J Wozniak

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
0.4field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Microbiology (Reading, England) · 2026
    Article
  3. Review
  4. Adaption ofMicroorganisms · 2023
    Review
  5. Review
  6. Article
  7. Transcriptomic analysis ofMicrobial genomics · 2022
    Article
  8. Specific and Global RNA Regulators inInternational journal of molecular sciences · 2021
    Review
  9. Article
  10. Widespread targeting of nascent transcripts by RsmA inProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Elizabeth A WaligoraDepartment of Microbiology and Immunology, Wake Forest University School of Medicine, Medical Center Blvd., Winston-Salem, North Carolina 27157, USA.
Deborah M Ramsey
Edward E Pryor
Haiping Lu
Thomas Hollis
Gina P Sloan
Rajendar Deora
Daniel J Wozniak
Wake Forest University · USInterface (United States) · US

Funding

CONTROL OF PSEUDOMONAS AERUGINOSA ALGD TRANSCRIPTIONR01HL058334 · NHLBI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI WOZNIAK, DANIEL J · 1996 to 2012
$2.5M
The matrix of Pseudomonas aeruginosa biofilmsR01AI061396 · NIAID · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI WOZNIAK, DANIEL J · 2005 to 2009
$2.1M
Bordetella Biofilms and PathogenesisR01AI075081 · NIAID · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI DEORA, RAJENDAR K · 2008 to 2011
$1.5M
The matrix of Pseudomonas aeruginosa biofilmsR56AI061396 · NIAID · OHIO STATE UNIVERSITY · PI WOZNIAK, DANIEL J · 2010 to 2010
$595k
The matrix of Pseudomonas aeruginosa biofilmsR21AI061396 · NIAID · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI WOZNIAK, DANIEL J · 2004 to 2004
$329k
NHLBI NIH HHS HL58334NHLBI NIH HHS R01 HL058334NIAID NIH HHS AI061396NIAID NIH HHS R01 AI061396NIAID NIH HHS R01 AI075081NIAID NIH HHS R21 AI061396NIAID NIH HHS R56 AI061396
6 · The paper itself

Abstract

AmrZ is a putative ribbon-helix-helix (RHH) transcriptional regulator. RHH proteins utilize residues within the β-sheet for DNA binding, while the α-helices promote oligomerization. AmrZ is of interest due to its dual roles as a transcriptional activator and as a repressor, regulating genes encoding virulence factors associated with both chronic and acute Pseudomonas aeruginosa infection. In this study, cross-linking revealed that AmrZ forms oligomers in solution but that the amino terminus, containing an unordered region and a β-sheet, were not required for oligomerization. The first 12 unordered residues (extended amino terminus) contributed minimally to DNA binding. Mutagenesis of the AmrZ β-sheet demonstrated that residues 18, 20, and 22 were essential for DNA binding at both activation and repressor sites, suggesting that AmrZ utilizes a similar mechanism for binding to these sites. Mice infected with amrZ mutants exhibited reduced bacterial burden, morbidity, and mortality. Direct in vivo competition assays showed a 5-fold competitive advantage for the wild type over an isogenic amrZ mutant. Finally, the reduced infection phenotype of the amrZ-null strain was similar to that of a strain expressing a DNA-binding-deficient AmrZ variant, indicating that DNA binding and transcriptional regulation by AmrZ is responsible for the in vivo virulence defect. These recent infection data, along with previously identified AmrZ-regulated virulence factors, suggest the necessity of AmrZ transcriptional regulation for optimal virulence during acute infection.

Indexed as

AlginatesAmino Acid SequenceAnimalsDNA, BacterialGene Expression Regulation, BacterialGlucuronic AcidHexuronic AcidsMiceModels, MolecularMutationProtein BindingProtein Structure, SecondaryPseudomonas aeruginosaTranscription, GeneticVirulenceAlginatesDNA, BacterialGlucuronic AcidHexuronic Acids

Identifiers

PMID20709902
PMCPMC2950516
OpenAlexW2165752657

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.