Evidence map›Paper›PMID 20706608›Full record

ArticleJournal of biomedicine & biotechnology2010

The role of genetic variation near interferon-kappa in systemic lupus erythematosus.

Isaac T W Harley, Timothy B Niewold, Rebecca M Stormont, Kenneth M Kaufman, Stuart B Glenn, Beverly S Franek, Jennifer A Kelly, Jeffrey R Kilpatrick, David Hutchings, Jasmin Divers and 22 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of biomedicine & biotechnology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed, 1 pooled it
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 1 synthesis or guideline pooled it, 63 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. Article
  5. Article
  6. Review
  7. Type I Interferons in Autoimmunity.The Journal of investigative dermatology · 2022
    Review
  8. Frontiers in genetics · 2022
    Article
  9. Review
  10. International journal of molecular sciences · 2021
    Article
  11. Review
  12. The Role of Cutaneous Type I IFNs in Autoimmune and Autoinflammatory Diseases.Journal of immunology (Baltimore, Md. : 1950) · 2020
    Review
  13. Review
  14. Article
  15. Review
  16. Review
  17. Article
  18. Article
  19. Article
  20. Type I interferon in rheumatic diseases.Nature reviews. Rheumatology · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

32 authors at 16 institutions in 6 countries.

Isaac T W HarleyDivision of Molecular Immunology and Graduate Program in Immunobiology, Cincinnati Children's Hospital Research Foundation, OH 45267, USA.
Timothy B Niewold
Rebecca M Stormont
Kenneth M Kaufman
Stuart B Glenn
Beverly S Franek
Jennifer A Kelly
Jeffrey R Kilpatrick
David Hutchings
Jasmin Divers
Gail R Bruner
Jeffrey C Edberg
Gerald McGwin
Michelle A Petri
Rosalind Ramsey-Goldman
John D Reveille
Luis M Vilá-Pérez
Joan T Merrill
Gary S Gilkeson
Timothy J Vyse
Marta E Alarcón-Riquelme
Soo-Kyung Cho
Chaim O Jacob
Graciela S Alarcón
Kathy L Moser
Patrick M Gaffney
Robert P Kimberly
Sang-Cheol Bae
Carl D Langefeld
John B Harley
Joel M Guthridge
Judith A James
Oklahoma Medical Research Foundation · USUniversity of Alabama at Birmingham · USHanyang University Seoul Hospital · KRUniversity of Chicago · USUniversity of Oklahoma Health Sciences Center · USWake Forest University · USHammersmith Hospital · GBJohns Hopkins Medicine · USMedical University of South Carolina · USNorthwestern University · USThe University of Texas Health Science Center at Houston · USUnited States Department of Veterans Affairs · USUniversity of Cincinnati · USUniversity of Puerto Rico System · PRUniversity of Southern California · USUppsala University · SE

Funding

Institute for Clinical and Translational Research (UL1)UL1RR025005 · NCRR · JOHNS HOPKINS UNIVERSITY · PI FORD, DANIEL ERNEST · 2007 to 2011
$75.8M
Translation of immunologic technologies from basic research into pre-clinical nonU19AI062629 · NIAID · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI THOMPSON, LINDA F · 2004 to 2023
$56.2M
ZINC AND CA EDTA THERAPY OF PLUMBISMM01RR000052 · NCRR · JOHNS HOPKINS UNIVERSITY · PI BELCHER, HAROLYN MILLICENT EDITH · 1985 to 2007
$37.3M
TRANSLATIONAL RESEARCH UNIVERSITY OF CHICAGO: CLINICAL TRIALSUL1RR024999 · NCRR · UNIVERSITY OF CHICAGO · PI SOLWAY, JULIAN · 2007 to 2011
$25.3M
MULTIDISCIPLINARY CLINICAL AND TRANSLATIONAL SCIENCE (MCTS) PROGRAM (UL1)UL1RR025741 · NCRR · NORTHWESTERN UNIVERSITY AT CHICAGO · PI GREENLAND, PHILIP · 2008 to 2011
$24.7M
THE EFFECTS OF ERK PATHWAY INHIBITION ON DNA METHYLATION IN SLEP20RR015577 · NCRR · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI CENTOLA, MICHAEL B · 2000 to 2009
$21.5M
WOMEN'S INTERAGENCY HIV STUDY (WIHS) INTENSIVE PHARMACOKINETICS STUDYM01RR000048 · NCRR · NORTHWESTERN UNIVERSITY AT CHICAGO · PI DUNAIF, ANDREA · 1985 to 2007
$21.1M
VALIDATING NOVEL GENES IMPLICATED IN LEUKOCYTE CHEMOTAXISP20RR020143 · NCRR · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI GAFFNEY, PATRICK M · 2004 to 2011
$21.0M
The Slamf3, Slamf5, and Slamf6 receptor-induced pathways to murine lupusP01AI065687 · NIAID · BETH ISRAEL DEACONESS MEDICAL CENTER · PI WANG, NINGHAI · 2006 to 2016
$14.7M
Program Project in the Genetics of SLEP01AR049084 · NIAMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI KIMBERLY, ROBERT P. · 2002 to 2012
$12.7M
SequencingP01AI083194 · NIAID · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI KIMBERLY, ROBERT P. · 2009 to 2013
$9.6M
Lupus CohortR01AR043727 · NIAMS · JOHNS HOPKINS UNIVERSITY · PI PETRI, MICHELLE A · 1997 to 2015
$8.2M
NCI NIH HHS R01 CA141700NCRR NIH HHS M01 RR000048NCRR NIH HHS M01 RR000052NCRR NIH HHS M01-RR00048NCRR NIH HHS P20 RR015577NCRR NIH HHS P20 RR020143NCRR NIH HHS P30 RR031152NCRR NIH HHS RR15577NCRR NIH HHS RR20143NCRR NIH HHS UL1-M01RR00052NCRR NIH HHS UL1 RR024999NCRR NIH HHS UL1-RR024999NCRR NIH HHS UL1 RR025005NCRR NIH HHS UL1-RR025005NCRR NIH HHS UL1 RR025741NCRR NIH HHS UL1-RR025741NIAID NIH HHS AI063274NIAID NIH HHS AI065687NIAID NIH HHS AI071651NIAID NIH HHS AI082714NIAID NIH HHS AI24717NIAID NIH HHS AI31584NIAID NIH HHS AI53747NIAID NIH HHS AI62629NIAID NIH HHS AI83194NIAID NIH HHS K08 AI083790NIAID NIH HHS L30 AI071651NIAID NIH HHS N01 AI050026-001NIAID NIH HHS P01 AI065687NIAID NIH HHS P01 AI083194NIAID NIH HHS R01 AI024717NIAID NIH HHS R01 AI031584NIAID NIH HHS R01 AI063274NIAID NIH HHS R21 AI053747NIAID NIH HHS R37 AI024717NIAID NIH HHS R56 AI063274NIAID NIH HHS U19 AI062629NIAID NIH HHS U19 AI082714NIAMS NIH HHS AR045084NIAMS NIH HHS AR052125NIAMS NIH HHS AR053483NIAMS NIH HHS AR058554NIAMS NIH HHS AR42460NIAMS NIH HHS AR43727NIAMS NIH HHS AR48940NIAMS NIH HHS AR49084NIAMS NIH HHS K24 AR002138NIAMS NIH HHS N01 AR062277NIAMS NIH HHS P01 AR049084NIAMS NIH HHS P01 AR49084NIAMS NIH HHS P01-AR49084NIAMS NIH HHS P30 AR053483NIAMS NIH HHS P50 AR048940NIAMS NIH HHS P60 AR030692NIAMS NIH HHS P60 AR049459NIAMS NIH HHS P60 AR30692NIAMS NIH HHS R01 AR033062NIAMS NIH HHS R01 AR042460NIAMS NIH HHS R01 AR042476NIAMS NIH HHS R01 AR043727NIAMS NIH HHS R01 AR052125NIAMS NIH HHS R01 AR33062NIAMS NIH HHS R01 AR42476NIAMS NIH HHS RC1 AR058554NIAMS NIH HHS RC1 AR058621NICHD NIH HHS HD07463NICHD NIH HHS T32 HD007463NIDCR NIH HHS DE15223NIDCR NIH HHS R01 DE015223NIGMS NIH HHS GM063483NIGMS NIH HHS P30 GM103510NIGMS NIH HHS T32 GM063483Wellcome Trust
6 · The paper itself

Abstract

Systemic lupus erythematosus (SLE) is a systemic autoimmune disease characterized by increased type I interferons (IFNs) and multiorgan inflammation frequently targeting the skin. IFN-kappa is a type I IFN expressed in skin. A pooled genome-wide scan implicated the IFNK locus in SLE susceptibility. We studied IFNK single nucleotide polymorphisms (SNPs) in 3982 SLE cases and 4275 controls, composed of European (EA), African-American (AA), and Asian ancestry. rs12553951C was associated with SLE in EA males (odds ratio = 1.93, P = 2.5 x 10(-4)), but not females. Suggestive associations with skin phenotypes in EA and AA females were found, and these were also sex-specific. IFNK SNPs were associated with increased serum type I IFN in EA and AA SLE patients. Our data suggest a sex-dependent association between IFNK SNPs and SLE and skin phenotypes. The serum IFN association suggests that IFNK variants could influence type I IFN producing plasmacytoid dendritic cells in affected skin.

Indexed as

Case-Control StudiesChi-Square DistributionFemaleGenetic Predisposition to DiseaseHaplotypesHumansInterferon Type ILinkage DisequilibriumLupus Erythematosus, SystemicMalePhenotypePolymorphism, Single NucleotideSex FactorsSkin Physiological PhenomenaStatistics, Nonparametricinterferon kappaInterferon Type I

Identifiers

PMID20706608
PMCPMC2914299
OpenAlexW2128008223

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.