Evidence map›Paper›PMID 20706207›Full record

ArticleMolecular systems biology2010

Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana.

Jelle Van Leene, Jens Hollunder, Dominique Eeckhout, Geert Persiau, Eveline Van De Slijke, Hilde Stals, Gert Van Isterdael, Aurine Verkest, Sandy Neirynck, Yelle Buffel and 20 more

Open access · goldAbstract read
In one paragraph

Article in Molecular systems biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 175 papers.

0numbers the graph read from it
0cells of the map it votes in
175citing papers in PubMed
39.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

175 citing papers in PubMed, 335 citations in OpenAlex.

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  12. International journal of molecular sciences · 2024
    Article
  13. Sugar signals pedal the cell cycle!Frontiers in plant science · 2024
    Review
  14. Review
  15. Article
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  17. Article
  18. Article
  19. Engineering apomixis in crops.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023
    Review
  20. Article

115 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

30 authors at 8 institutions in 5 countries.

Jelle Van LeeneDepartment of Plant Systems Biology, VIB, Ghent, Belgium.
Jens Hollunder
Dominique Eeckhout
Geert Persiau
Eveline Van De Slijke
Hilde Stals
Gert Van Isterdael
Aurine Verkest
Sandy Neirynck
Yelle Buffel
Stefanie De Bodt
Steven Maere
Kris Laukens
Anne Pharazyn
Paulo C G Ferreira
Nubia Eloy
Charlotte Renne
Christian Meyer
Jean-Denis Faure
Jens Steinbrenner
Jim Beynon
John C Larkin
Yves Van de Peer
Pierre Hilson
Martin Kuiper
Lieven De Veylder
Harry Van Onckelen
Dirk Inzé
Erwin Witters
Geert De Jaeger
Ghent University · BEVIB-UGent Center for Plant Systems Biology · BEAgroParisTech · FRUniversity of Antwerp · BEUniversidade Federal do Rio de Janeiro · BRUniversity of Warwick · GBAntwerp Management School · BELouisiana State University · US

Funding

Biotechnology and Biological Sciences Research Council BB/G015066/1
6 · The paper itself

Abstract

Cell proliferation is the main driving force for plant growth. Although genome sequence analysis revealed a high number of cell cycle genes in plants, little is known about the molecular complexes steering cell division. In a targeted proteomics approach, we mapped the core complex machinery at the heart of the Arabidopsis thaliana cell cycle control. Besides a central regulatory network of core complexes, we distinguished a peripheral network that links the core machinery to up- and downstream pathways. Over 100 new candidate cell cycle proteins were predicted and an in-depth biological interpretation demonstrated the hypothesis-generating power of the interaction data. The data set provided a comprehensive view on heterodimeric cyclin-dependent kinase (CDK)-cyclin complexes in plants. For the first time, inhibitory proteins of plant-specific B-type CDKs were discovered and the anaphase-promoting complex was characterized and extended. Important conclusions were that mitotic A- and B-type cyclins form complexes with the plant-specific B-type CDKs and not with CDKA;1, and that D-type cyclins and S-phase-specific A-type cyclins seem to be associated exclusively with CDKA;1. Furthermore, we could show that plants have evolved a combinatorial toolkit consisting of at least 92 different CDK-cyclin complex variants, which strongly underscores the functional diversification among the large family of cyclins and reflects the pivotal role of cell cycle regulation in the developmental plasticity of plants.

Indexed as

Cell CycleArabidopsisArabidopsis ProteinsCell Cycle ProteinsComputational BiologyCyclin-Dependent KinasesCyclinsDNA ReplicationLuciferasesMitosisModels, BiologicalMultiprotein ComplexesProtein BindingProtein Interaction MappingReproducibility of ResultsArabidopsis ProteinsCell Cycle ProteinsCyclin-Dependent KinasesCyclinsLuciferasesMultiprotein Complexes

Identifiers

PMID20706207
PMCPMC2950081
OpenAlexW2139694094

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.