Evidence map›Paper›PMID 20701307›Full record

ArticleThe journal of physical chemistry. B2010

Splaying of aliphatic tails plays a central role in barrier crossing during liposome fusion.

Dina Mirjanian, Allison N Dickey, Jan H Hoh, Thomas B Woolf, Mark J Stevens

Abstract read
In one paragraph

Article in The journal of physical chemistry. B, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 68 citations in OpenAlex.

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  16. Lipid nanotechnology.International journal of molecular sciences · 2013
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  19. Sequence-dependent backbone dynamics of a viral fusogen transmembrane helix.Protein science : a publication of the Protein Society · 2012
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Dina MirjanianCenter for Integrated Nanotechologies, Sandia National Laboratories, Albuquerque, New Mexico, USA.
Allison N Dickey
Jan H Hoh
Thomas B Woolf
Mark J Stevens
Center for Integrated Nanotechnologies · USSandia National Laboratories · USJohns Hopkins University · US

Funding

Structure and Affinity: Computing FABP-Lipid SelectivityR01GM064746 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI WOOLF, THOMAS B · 2003 to 2006
$1.1M
Engineering Fusogenic properties of lipid bilayersR21GM076443 · NIGMS · SANDIA CORP-SANDIA NATIONAL LABORATORIES · PI STEVENS, MARK · 2006 to 2007
$369k
NIGMS NIH HHS 5R21GM076443NIGMS NIH HHS R01 GM064746NIGMS NIH HHS R21 GM076443
6 · The paper itself

Abstract

The fusion between two lipid bilayers involves crossing a complicated energy landscape. The limiting barrier in the process appears to be between two closely opposed bilayers and the intermediate state where the outer leaflets are fused. We have performed molecular dynamics simulations to characterize the free energy barrier for the fusion of two liposomes and to examine the molecular details of barrier crossing. To capture the slow dynamics of fusion, a model using coarse-grained representations of lipids was used. The fusion between pairs of liposomes was simulated for four systems: DPPC, DOPC, a 3:1 mixture of DPPC/DPPE, and an asymmetric lipid tail system in which one tail of DPPC was reduced to half the length (ASTail). The weighted histogram method was used to compute the free energy as a function of separation distance. The relative barrier heights for these systems was found to be ASTail >> DPPC > DPPC/DPPE > DOPC, in agreement with experimental observations. Further, the free energy curves for all four can be overlaid on a single curve by plotting the free energy versus the surface separation (differing only in the point of fusion). These simulations also confirm that the two main contributions to the free energy barrier are the removal of water between the vesicles and the deformation of the vesicle. The most prominent molecular detail of barrier crossing in all cases examined was the splaying of lipid tails, where initially a single splayed lipid formed a bridge between the two outer leaflets that promotes additional lipid mixing between the vesicles and eventually leads to fusion. The tail splay appears to be closely connected to the energetics of the process. For example, the high barrier for the ASTail is the result of a smaller distance between terminal methyl groups in the splayed molecule. The shortening of this distance requires the liposomes to be closer together, which significantly increases the cost of water removal and bilayer deformation. Before tail splay can initiate fusion, contact must occur between a tail end and the external water. In isolated vesicles, the contact fraction is correlated to the fusogenicity difference between DPPC and DOPC. Moreover, for planar bilayers, the contact fraction is much lower for DPPC, which is consistent with its lack of fusion in giant vesicles. The simulation results show the key roles of lipid tail dynamics in governing the fusion energy landscape.

Indexed as

1,2-DipalmitoylphosphatidylcholineHydrophobic and Hydrophilic InteractionsLipid BilayersLiposomesMolecular Dynamics SimulationPhosphatidylcholinesPhosphatidylethanolaminesThermodynamics1,2-dipalmitoyl-3-phosphatidylethanolamine1,2-Dipalmitoylphosphatidylcholine1,2-oleoylphosphatidylcholineLipid BilayersLiposomesPhosphatidylcholinesPhosphatidylethanolamines

Identifiers

PMID20701307
PMCPMC2929012
OpenAlexW2078359718

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.