Evidence map›Paper›PMID 20699404›Full record

ArticlePlant physiology2010

A suite of Lotus japonicus starch mutants reveals both conserved and novel features of starch metabolism.

Cécile Vriet, Tracey Welham, Andreas Brachmann, Marilyn Pike, Jodie Pike, Jillian Perry, Martin Parniske, Shusei Sato, Satoshi Tabata, Alison M Smith and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
10.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 60 citations in OpenAlex.

  1. Article
  2. Potential Role ofFrontiers in plant science · 2022
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  6. Review
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  17. Starch metabolism in Arabidopsis.The arabidopsis book · 2012
    Article
  18. Article
  19. TILLING: a shortcut in functional genomics.Journal of applied genetics · 2011
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 3 countries.

Cécile VrietMetabolic Biology, John Innes Centre, Colney, Norwich, United Kingdom.
Tracey Welham
Andreas Brachmann
Marilyn Pike
Jodie Pike
Jillian Perry
Martin Parniske
Shusei Sato
Satoshi Tabata
Alison M Smith
Trevor L Wang
Sainsbury Laboratory · GBJohn Innes Centre · GBKazusa DNA Research Institute · JPNorwich Research Park · GBLudwig-Maximilians-Universität München · DE

Funding

Biotechnology and Biological Sciences Research Council BBS/E/J/00000150
6 · The paper itself

Abstract

The metabolism of starch is of central importance for many aspects of plant growth and development. Information on leaf starch metabolism other than in Arabidopsis (Arabidopsis thaliana) is scarce. Furthermore, its importance in several agronomically important traits exemplified by legumes remains to be investigated. To address this issue, we have provided detailed information on the genes involved in starch metabolism in Lotus japonicus and have characterized a comprehensive collection of forward and TILLING (for Targeting Induced Local Lesions IN Genomes) reverse genetics mutants affecting five enzymes of starch synthesis and two enzymes of starch degradation. The mutants provide new insights into the structure-function relationships of ADP-glucose pyrophosphorylase and glucan, water dikinase1 in particular. Analyses of the mutant phenotypes indicate that the pathways of leaf starch metabolism in L. japonicus and Arabidopsis are largely conserved. However, the importance of these pathways for plant growth and development differs substantially between the two species. Whereas essentially starchless Arabidopsis plants lacking plastidial phosphoglucomutase grow slowly relative to wild-type plants, the equivalent mutant of L. japonicus grows normally even in a 12-h photoperiod. In contrast, the loss of GLUCAN, WATER DIKINASE1, required for starch degradation, has a far greater effect on plant growth and fertility in L. japonicus than in Arabidopsis. Moreover, we have also identified several mutants likely to be affected in new components or regulators of the pathways of starch metabolism. This suite of mutants provides a substantial new resource for further investigations of the partitioning of carbon and its importance for symbiotic nitrogen fixation, legume seed development, and perenniality and vegetative regrowth.

Indexed as

ArabidopsisChromosome MappingGene Expression Regulation, PlantGenes, PlantGlucose-1-Phosphate AdenylyltransferaseLotusMolecular Sequence DataMutationPlant ProteinsSequence Analysis, DNAStarchStructure-Activity RelationshipGlucose-1-Phosphate AdenylyltransferasePlant ProteinsStarch

Identifiers

PMID20699404
PMCPMC2949007
OpenAlexW2008003857

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.