Evidence map›Paper›PMID 20699122›Full record

ArticleMethods (San Diego, Calif.)2010

Analysis of messenger RNA expression by in situ hybridization using RNA probes synthesized via in vitro transcription.

Bradley S Carter, Jonathan S Fletcher, Robert C Thompson

Open access · greenAbstract read
In one paragraph

Article in Methods (San Diego, Calif.), 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. MYCN RNA levels determined by quantitative in situ hybridization is better than MYCN gene dosages in predicting the prognosis of neuroblastoma patients.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2020
    Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Bradley S CarterNeuroscience Graduate Program, University of Michigan, Ann Arbor, MI 48109-2200, USA. bscarter@umich.edu
Jonathan S Fletcher
Robert C Thompson
University of Michigan–Ann Arbor · USMichigan Medicine · US

Funding

Cocaine Regulation of miRNAs in Rats with Differing Vulnerability to Drug AbuseR01DA025973 · NIDA · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI THOMPSON, ROBERT C, WATSON, STANLEY J · 2008 to 2012
$2.0M
NALT-BASED ADJUVANTS FOR MUCOSAL IMMUNITY IN AGINGR01AG025873 · NIA · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI FUJIHASHI, KOHTARO · 2006 to 2010
$1.4M
microRNA Expression Patterns in Human Psychiatric CNS SamplesR21MH083175 · NIMH · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI THOMPSON, ROBERT C · 2009 to 2010
$425k
NIA NIH HHS R01 AG025873NIDA NIH HHS R01 DA025873NIDA NIH HHS R01 DA025973NIMH NIH HHS R21 MH083175
6 · The paper itself

Abstract

The analysis of the spatial patterning of mRNA expression is critically important for assigning functional and physiological significance to a given gene product. Given the tens of thousands of mRNAs in the mammalian genome, a full assessment of individual gene functions would ideally be overlaid upon knowledge of the specific cell types expressing each mRNA. In situ hybridization approaches represent a molecular biological/histological method that can reveal cellular patterns of mRNA expression. Here, we present detailed procedures for the detection of specific mRNAs using radioactive RNA probes in tissue sections followed by autoradiographic detection. These methods allow for the specific and sensitive detection of spatial patterns of mRNA expression, thereby linking mRNA expression with cell type and function. Radioactive detection methods also facilitate semi-quantitative analyses of changes in mRNA gene expression.

Indexed as

AutoradiographyGene ExpressionIn Situ HybridizationPhosphorus RadioisotopesRNA, MessengerRNA ProbesSulfur RadioisotopesTritiumPhosphorus RadioisotopesRNA, MessengerRNA ProbesSulfur RadioisotopesTritium

Identifiers

PMID20699122
PMCPMC2987549
OpenAlexW1973198253

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.