Evidence map›Paper›PMID 20698792›Full record

ReviewAntioxidants & redox signaling2011

Coordination of DNA-PK activation and nuclease processing of DNA termini in NHEJ.

Katherine S Pawelczak, Sara M Bennett, John J Turchi

Abstract readReview
In one paragraph

Review in Antioxidants & redox signaling, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. TET1 regulates DNA repair in human glial cells.Toxicology and applied pharmacology · 2019
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
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  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Katherine S PawelczakDepartment of Biochemistry and Molecular Biology, Indiana University School of Medicine, 980 W. Walnut St., Indianapolis, IN 46202, USA.
Sara M Bennett
John J Turchi

Funding

Validation of RPA as a Target for Cancer ChemotherapyR01CA082741 · NCI · WRIGHT STATE UNIVERSITY · PI TURCHI, JOHN J. · 2000 to 2011
$2.3M
Development of methodologies for the analysis of DNA repair capacity to predict tR21CA128628 · NCI · INDIANA UNIVERSITY INDIANAPOLIS · PI TURCHI, JOHN J. · 2008 to 2009
$374k
NCI NIH HHS R01 CA082741NCI NIH HHS R01CA82741NCI NIH HHS R21CA128628
6 · The paper itself

Abstract

DNA double-strand breaks (DSB), particularly those induced by ionizing radiation (IR), are complex lesions that can be cytotoxic if not properly repaired. IR-induced DSB often have DNA termini modifications, including thymine glycols, ring fragmentation, 3'-phosphoglycolates, 5'-hydroxyl groups, and abasic sites. Nonhomologous end joining (NHEJ) is a major pathway responsible for the repair of these complex breaks. Proteins involved in NHEJ include the Ku 70/80 heterodimer, DNA-PKcs, processing proteins including Artemis and DNA polymerases μ and λ, XRCC4, DNA ligase IV, and XLF. We will discuss the role of the physical and functional interactions of DNA-PK as a result of activation, with an emphasis on DNA structure, chemistry, and sequence. With the diversity of IR induced DSB, it is becoming increasingly clear that multiple DNA processing enzymes are likely necessary for effective repair of a break. We will explore the roles of several important processing enzymes, with a focus on the nuclease Artemis and its role in processing diverse DSB. The effect of DNA termini on both DNA-PK and Artemis activity will be analyzed from a structural and biochemical view.

Indexed as

DNA RepairAntigens, NuclearDNADNA-Activated Protein KinaseDNA-Binding ProteinsDNA Breaks, Double-StrandedEndonucleasesEnzyme ActivationKu AutoantigenNuclear ProteinsAntigens, NuclearDCLRE1C protein, humanDNADNA-Activated Protein KinaseDNA-Binding ProteinsEndonucleasesKu AutoantigenNuclear ProteinsXrcc6 protein, human

Identifiers

PMID20698792
PMCPMC3096510

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.