Evidence map›Paper›PMID 20697102›Full record

ArticleNeurology2010

Analysis of GWAS-linked loci in Parkinson disease reaffirms PARK16 as a susceptibility locus.

E-K Tan, H-H Kwok, H-K Kwok, L C Tan, W-T Zhao, K M Prakash, W-L Au, R Pavanni, Y-Y Ng, W Satake and 3 more

Erratum issuedAbstract readComparative StudyMulticenter Study
In one paragraph

Article in Neurology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 35 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed, 4 pooled it
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 4 syntheses or guidelines pooled it, 79 citations in OpenAlex.

  1. Pooled it
  2. Association between alpha-synuclein (SNCA) rs11931074 variability and susceptibility to Parkinson's disease: an updated meta-analysis of 41,811 patients.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2020
    Pooled it
  3. An updated analysis with 45,078 subjects confirms the association between SNCA rs11931074 and Parkinson's disease.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2018
    Pooled it
  4. Pooled it
  5. Interaction Between Cigarette Smoking and PARK16 on Parkinson's Disease.International journal of molecular sciences · 2026
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  14. SNPs rs11240569, rs708727, and rs823156 inInternational journal of molecular sciences · 2019
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  17. The Effects ofFrontiers in neuroscience · 2019
    Article
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4 · The record

Corrections and comments

  • Erratum issued
    Kwok, H-K [corrected to Kwok, H-H]
5 · Who and what money

Authors and funding

13 authors at 1 institution in 1 country.

E-K TanDepartment of Neurology, Singapore General Hospital, Singapore. gnrtek@sgh.com.sg
H-H Kwok
H-K Kwok
L C Tan
W-T Zhao
K M Prakash
W-L Au
R Pavanni
Y-Y Ng
W Satake
Y Zhao
T Toda
J-J Liu
Hesco (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectiveA genome-wide association study (GWAS) in the Japanese population identified 2 new Parkinson disease (PD) susceptibility loci on 1q32 (PARK16) (OMIM 613164) and BST1. We analyzed single nucleotide polymorphism (SNPs) located at the GWAS-linked loci (PARK16, PARK8, PARK1, and BST1) in a Chinese population and also conducted a meta-analysis in Asians by pooling 2 independent replication studies from Japan.

methodsWe conducted an analysis of 13 SNPs associated with PD GWAS-linked loci in 2 case-control cohorts comprised of 1,349 ethnic Chinese subjects.

resultsPARK16, PARK8, and PARK1 loci but not BST1 were found to be associated with PD. PARK16 SNPs were associated with a decreased risk while PARK1 and PARK8 SNPs were associated with an increased risk of PD. A pooled analysis of our Chinese cohorts and 2 Japanese replication cohorts involving 1,366 subjects with PD and 16,669 controls revealed robust association with these 3 loci and also BST1. There was a trend toward a stronger protective effect of SNPs at the PARK16 locus in sporadic PD compared to familial cases and in older compared to younger subjects.

conclusionsOur study reaffirms the role of GWAS-linked loci in PD in Asian subjects and the strength of association is similar between Chinese and Japanese subjects. Efforts to elucidate the associated gene within PARK16 locus are warranted.

Indexed as

ADP-ribosyl Cyclasealpha-SynucleinAntigens, CDAsian PeopleCase-Control StudiesCohort StudiesFemaleGenetic LociGenetic Predisposition to DiseaseGenome-Wide Association StudyGPI-Linked ProteinsHumansLeucine-Rich Repeat Serine-Threonine Protein Kinase-2MaleMiddle AgedParkinson DiseaseADP-ribosyl CyclaseADP-ribosyl cyclase 2alpha-SynucleinAntigens, CDGPI-Linked ProteinsLeucine-Rich Repeat Serine-Threonine Protein Kinase-2LRRK2 protein, humanProtein Serine-Threonine KinasesSNCA protein, human

Identifiers

PMID20697102
PMCPMC2918477
OpenAlexW2002315504

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.