Evidence map›Paper›PMID 20696762›Full record

ArticleThe Journal of biological chemistry2010

Critical role of 7,8-didemethyl-8-hydroxy-5-deazariboflavin for photoreactivation in Chlamydomonas reinhardtii.

Jason L Petersen, Patrick J Ronan

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.3field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 17 citations in OpenAlex.

  1. EquippingACS synthetic biology · 2024
    Article
  2. Article
  3. Article
  4. Article
  5. The methanogenic redox cofactor FThe ISME journal · 2017
    Article
  6. Physiology, Biochemistry, and Applications of F420- and Fo-Dependent Redox Reactions.Microbiology and molecular biology reviews : MMBR · 2016
    Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Jason L PetersenBasic Research Division, Avera Research Institute, Sioux Falls, South Dakota 57105, USA. Jason.Petersen@avera.org
Patrick J Ronan
University of South Dakota · US

Funding

VIRAL-MEDIATED RNA INTERFERENCE IN THE ADULT RAT BRAINP20RR015567 · NCRR · UNIVERSITY OF SOUTH DAKOTA · PI KEIFER, JOYCE · 2000 to 2009
$16.3M
NCRR NIH HHS P20 RR015567NCRR NIH HHS P20RR015567
6 · The paper itself

Abstract

DNA photolyases use two noncovalently bound chromophores to catalyze photoreactivation, the blue light-dependent repair of DNA that has been damaged by ultraviolet light. FAD is the catalytic chromophore for all photolyases and is essential for photoreactivation. The identity of the second chromophore is often 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO). Under standard light conditions, the second chromophore is considered nonessential for photoreactivation because DNA photolyase bound to only FAD is sufficient to catalyze the repair of UV-damaged DNA. phr1 is a photoreactivation-deficient strain of Chlamydomonas. In this work, the PHR1 gene of Chlamydomonas was cloned through molecular mapping and shown to encode a protein similar to known FO synthases. Additional results revealed that the phr1 strain was deficient in an FO-like molecule and that this deficiency, as well as the phr1 photoreactivation deficiency, could be rescued by transformation with DNA constructs containing the PHR1 gene. Furthermore, expression of a PHR1 cDNA in Escherichia coli produced a protein that generated a molecule with characteristics similar to FO. Together, these results indicate that the Chlamydomonas PHR1 gene encodes an FO synthase and that optimal photoreactivation in Chlamydomonas requires FO, a molecule known to serve as a second chromophore for DNA photolyases.

Indexed as

Chlamydomonas reinhardtiiDeoxyribodipyrimidine Photo-LyaseEscherichia coliEscherichia coli ProteinsExonsFungal ProteinsGenetic Complementation TestIntronsLightMolecular Sequence DataRiboflavinRiboflavin Synthase5-deazariboflavinDeoxyribodipyrimidine Photo-LyaseEscherichia coli ProteinsFungal ProteinsRiboflavinRiboflavin Synthase

Identifiers

PMID20696762
PMCPMC2952248
OpenAlexW2032797581

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.