Evidence map›Paper›PMID 20695527›Full record

ArticleBiochemistry2010

Reversible post-translational carboxylation modulates the enzymatic activity of N-acetyl-L-ornithine transcarbamylase.

Yongdong Li, Xiaolin Yu, Jeremy Ho, David Fushman, Norma M Allewell, Mendel Tuchman, Dashuang Shi

Abstract read
In one paragraph

Article in Biochemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
  2. Article
  3. Chemoproteomic identification of CONature chemical biology · 2022
    Article
  4. Review
  5. Lysine carboxylation: unveiling a spontaneous post-translational modification.Acta crystallographica. Section D, Biological crystallography · 2014
    Article
  6. Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yongdong LiResearch Center for Genetic Medicine and Department of Integrative Systems Biology, Children's National Medical Center, The George Washington University, Washington, DC 20010, USA.
Xiaolin Yu
Jeremy Ho
David Fushman
Norma M Allewell
Mendel Tuchman
Dashuang Shi

Funding

ZINC FINGER-DNA COMPLEXP41RR001646 · NCRR · CORNELL UNIVERSITY ITHACA · PI CINGOLANI, GINO · 1985 to 2011
$23.8M
The molecular bases of inherited urea cycle disorders and ureagenesis regulationR01DK047870 · NIDDK · UNIVERSITY OF MINNESOTA TWIN CITIES · PI TUCHMAN, MENDEL · 1995 to 2010
$3.4M
Structural Studies of NAGSK01DK067935 · NIDDK · CHILDREN'S RESEARCH INSTITUTE · PI SHI, DASHUANG · 2004 to 2006
$373k
NCRR NIH HHS P41 RR001646NCRR NIH HHS RR-01646NIDDK NIH HHS DK-067935NIDDK NIH HHS DK-47870NIDDK NIH HHS K01 DK067935NIDDK NIH HHS R01 DK047870NIGMS NIH HHS DMR-0225180
6 · The paper itself

Abstract

N-Acetyl-l-ornithine transcarbamylase (AOTCase), rather than ornithine transcarbamylase (OTCase), is the essential carbamylase enzyme in the arginine biosynthesis of several plant and human pathogens. The specificity of this unique enzyme provides a potential target for controlling the spread of these pathogens. Recently, several crystal structures of AOTCase from Xanthomonas campestris (xc) have been determined. In these structures, an unexplained electron density at the tip of the Lys302 side chain was observed. Using (13)C NMR spectroscopy, we show herein that Lys302 is post-translationally carboxylated. The structure of wild-type AOTCase in a complex with the bisubstrate analogue N(delta)-(phosphonoacetyl)-N(alpha)-acetyl-l-ornithine (PALAO) indicates that the carboxyl group on Lys302 forms a strong hydrogen bonding network with surrounding active site residues, Lys252, Ser253, His293, and Glu92 from the adjacent subunit either directly or via a water molecule. Furthermore, the carboxyl group is involved in binding N-acetyl-l-ornithine via a water molecule. Activity assays with the wild-type enzyme and several mutants demonstrate that the post-translational modification of lysine 302 has an important role in catalysis.

Indexed as

Bacterial ProteinsCrystallography, X-RayHydrogen BondingLysineMagnetic Resonance SpectroscopyMass SpectrometryOrnithineOrnithine CarbamoyltransferaseProtein BindingProtein Processing, Post-TranslationalProtein Structure, SecondaryXanthomonas campestrisBacterial ProteinsLysineOrnithineOrnithine Carbamoyltransferase

Identifiers

PMID20695527
PMCPMC2959125

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.