Evidence map›Paper›PMID 20693610›Full record

ArticleInternational journal of computational biology and drug design2010

Identifying genes progressively silenced in preneoplastic and neoplastic liver tissues.

Kellie J Archer, Zhongming Zhao, Tobias Guennel, Daniel G Maluf, Robert A Fisher, Valeria R Mas

Abstract read
In one paragraph

Article in International journal of computational biology and drug design, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Kellie J ArcherDepartment of Biostatistics, Virginia Commonwealth University, Richmond, Virginia 23298-0032, USA. kjarcher@vcu.edu
Zhongming Zhao
Tobias Guennel
Daniel G Maluf
Robert A Fisher
Valeria R Mas
Virginia Commonwealth University · US

Funding

Genes Related to HCC Progression in LD and DD TransplantR01DK069859 · NIDDK · VIRGINIA COMMONWEALTH UNIVERSITY · PI FISHER, ROBERT A · 2006 to 2010
$2.5M
NIDDK NIH HHS R01 DK069859NIDDK NIH HHS R01DK069859
6 · The paper itself

Abstract

High-throughput genomic technologies are increasingly being used to identify therapeutic targets and risk factors for specific diseases. Using 116 independent liver samples, we identified 793 probe sets that demonstrated a significant association in the frequency of absent calls as tissues progressed from normal to pre-neoplastic to neoplastic, followed by a bioinformatic approach which identified that 78.9% of the significant probe sets contained at least one CpG island in the gene promoter region compared with 58.9% of the remaining genes examined. Our results indicate that further high-throughput methylation studies to more fully characterize molecular events involved in hepatocarcinogenesis are warranted.

Indexed as

Carcinoma, HepatocellularComputational BiologyCpG IslandsDNA MethylationGenomicsHigh-Throughput Screening AssaysHumansLiverLiver NeoplasmsPrecancerous ConditionsPromoter Regions, GeneticRisk Factors

Identifiers

PMID20693610
PMCPMC3740367
OpenAlexW2027963913

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.