Evidence map›Paper›PMID 20693282›Full record

ArticleThe Journal of biological chemistry2010

Alternative splicing and polyadenylation contribute to the generation of hERG1 C-terminal isoforms.

Qiuming Gong, Matthew R Stump, A Russell Dunn, Vivianne Deng, Zhengfeng Zhou

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.6field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 19 citations in OpenAlex.

  1. Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  2. Review
  3. Article
  4. The ERG1 KFrontiers in molecular neuroscience · 2022
    Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Qiuming GongDivision of Cardiovascular Medicine, Department of Medicine, Oregon Health & Science University, Portland, Oregon 97239, USA.
Matthew R Stump
A Russell Dunn
Vivianne Deng
Zhengfeng Zhou
Oregon Health & Science University · US

Funding

Pathogenesis of HERG Mutations in Human Long QT SyndromeR01HL068854 · NHLBI · OREGON HEALTH & SCIENCE UNIVERSITY · PI ZHOU, ZHENGFENG · 2002 to 2018
$5.7M
NHLBI NIH HHS HL-68854NHLBI NIH HHS R01 HL068854
6 · The paper itself

Abstract

The human ether-a-go-go-related gene 1 (hERG1) encodes the pore-forming subunit of the rapidly activating delayed rectifier potassium channel. Several hERG1 isoforms with different N- and C-terminal ends have been identified. The hERG1a, hERG1b, and hERG1-3.1 isoforms contain the full-length C terminus, whereas the hERG1(USO) isoforms, hERG1a(USO) and hERG1b(USO), lack most of the C-terminal domain and contain a unique C-terminal end. The mechanisms underlying the generation of hERG1(USO) isoforms are not understood. We show that hERG1 isoforms with different C-terminal ends are generated by alternative splicing and polyadenylation of hERG1 pre-mRNA. We identified an intrinsically weak, noncanonical poly(A) signal, AGUAAA, within intron 9 of hERG1 that modulates the expression of hERG1a and hERG1a(USO). Replacing AGUAAA with the strong, canonical poly(A) signal AAUAAA resulted in the predominant production of hERG1a(USO) and a marked decrease in hERG1 current. In contrast, eliminating the intron 9 poly(A) signal or increasing the strength of 5' splice site led to the predominant production of hERG1a and a significant increase in hERG1 current. We found significant variation in the relative abundance of hERG1 C-terminal isoforms in different human tissues. Taken together, these findings suggest that post-transcriptional regulation of hERG1 pre-mRNA may represent a novel mechanism to modulate the expression and function of hERG1 channels.

Indexed as

Alternative SplicingAnimalsBase SequenceERG1 Potassium ChannelEther-A-Go-Go Potassium ChannelsGene Expression RegulationHumansMolecular Sequence DataMutationPatch-Clamp TechniquesPolyadenylationProtein IsoformsProtein Structure, TertiaryRNA PrecursorsSequence Analysis, DNATissue DistributionERG1 Potassium ChannelEther-A-Go-Go Potassium ChannelsKCNH2 protein, humanProtein IsoformsRNA Precursors

Identifiers

PMID20693282
PMCPMC2952224
OpenAlexW2066413635

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.