Evidence map›Paper›PMID 20691900›Full record

ArticleCell2010

Single-stranded DNA transposition is coupled to host replication.

Bao Ton-Hoang, Cécile Pasternak, Patricia Siguier, Catherine Guynet, Alison Burgess Hickman, Fred Dyda, Suzanne Sommer, Michael Chandler

Open access · bronzeAbstract read
In one paragraph

Article in Cell, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 81 citations in OpenAlex.

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  9. Replitrons: A major group of eukaryotic transposons encoding HUH endonuclease.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Bao Ton-HoangLaboratoire de Microbiologie et Génétique Moléculaires, Centre National de Recherche Scientifique, Unité Mixte de Recherche 5100, 118 Route de Narbonne, F31062 Toulouse Cedex, France. bao.tonhoang@ibcg.biotoul.fr
Cécile Pasternak
Patricia Siguier
Catherine Guynet
Alison Burgess Hickman
Fred Dyda
Suzanne Sommer
Michael Chandler
Laboratoire de Microbiologie et Génétique Moléculaires · FRNational Institutes of Health · USUniversité Paris-Sud · FR

Funding

Structure and function of novel prokaryotic DNA transposasesZIADK036154 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI DYDA, FREDERICK · 2009 to 2023
$7.7M
Structure and function of novel prokaryotic DNA transposasesZ01DK036154 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI DYDA, FREDERICK · 2007 to 2008
$656k
Intramural NIH HHS Z01 DK036154
6 · The paper itself

Abstract

DNA transposition has contributed significantly to evolution of eukaryotes and prokaryotes. Insertion sequences (ISs) are the simplest prokaryotic transposons and are divided into families on the basis of their organization and transposition mechanism. Here, we describe a link between transposition of IS608 and ISDra2, both members of the IS200/IS605 family, which uses obligatory single-stranded DNA intermediates, and the host replication fork. Replication direction through the IS plays a crucial role in excision: activity is maximal when the "top" IS strand is located on the lagging-strand template. Excision is stimulated upon transient inactivation of replicative helicase function or inhibition of Okazaki fragment synthesis. IS608 insertions also exhibit an orientation preference for the lagging-strand template and insertion can be specifically directed to stalled replication forks. An in silico genomic approach provides evidence that dissemination of other IS200/IS605 family members is also linked to host replication.

Indexed as

DNA ReplicationDNA Transposable ElementsDeinococcusDNA HelicasesDNA PrimaseDNA, Single-StrandedEscherichia coliEscherichia coli ProteinsTrans-ActivatorsDNA HelicasesDNA PrimaseDNA, Single-StrandedDNA Transposable ElementsEscherichia coli Proteinsreplication initiator proteinTrans-Activatorstus protein, E coli

Identifiers

PMID20691900
PMCPMC2919506
OpenAlexW2023259875

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.