Evidence map›Paper›PMID 20691478›Full record

ArticleMolecular immunology2010

The pattern of somatic hypermutation of Ig genes is altered when p53 is inactivated.

Sarayu Ratnam, Grazyna Bozek, Dan Nicolae, Ursula Storb

Open access · greenAbstract read
In one paragraph

Article in Molecular immunology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Sarayu RatnamDepartment of Molecular Genetics and Cell Biology, University of Chicago, 920 East 58th Street, Chicago, IL 60637, United States.
Grazyna Bozek
Dan Nicolae
Ursula Storb
University of Chicago · US

Funding

MECHANISM OF IMMUNOGLOBULIN HYPERMUTATIONR01AI047380 · NIAID · UNIVERSITY OF CHICAGO · PI STORB, URSULA B · 2000 to 2010
$4.2M
Immunoglobulin Somatic MutationR01AI053130 · NIAID · UNIVERSITY OF CHICAGO · PI STORB, URSULA B · 2003 to 2007
$1.3M
Mechanism of Immunoglobulin HypermutationR56AI047380 · NIAID · UNIVERSITY OF CHICAGO · PI STORB, URSULA B · 2012 to 2012
$395k
NIAID NIH HHS AI047380NIAID NIH HHS AI053130NIAID NIH HHS R01 AI047380NIAID NIH HHS R01 AI053130NIAID NIH HHS R56 AI047380
6 · The paper itself

Abstract

Mice with a deletion of the p53 gene have normal antibody titers against sheep red blood cells and normal switching to all Ig isotypes. In older mice (11 and 16 weeks old) the somatic hypermutation (SHM) frequencies are progressively reduced. In young mice (8 weeks old) with p53 deletion, the SHM frequencies are normal. However, the mutation pattern is changed in all p53-/- mice: mutations at A are increased. Surprisingly, deletion of the Ung2 gene in addition to the deletion of p53 corrected the A mutation frequencies to those of control mice. Known interactions of p53 protein with several proteins involved in error-prone BER during SHM may explain these findings. There is no indication that the absence of p53 affects the function of AID. Inactivation of p21 does not alter SHM, supporting the idea that the p53 protein is involved in SHM by its direct association with the SHM process. There is no significant change of mutations at T. Thus, the hypermutability at A is strand-biased (transcription? replication?). The translesion polymerase pol eta has so far been found to be the sole mutator at A and T in mice. However, the pattern in p53-/- mice is compatible with the possible inhibition by p53 of another translesion polymerase, pol iota, which in the absence of p53 may be recruited to error-prone repair of abasic sites in SHM.

Indexed as

Somatic Hypermutation, ImmunoglobulinAnimalsDNA Mismatch RepairGene Expression RegulationMiceMice, Inbred C57BLMice, KnockoutTumor Suppressor Protein p53Tumor Suppressor Protein p53

Identifiers

PMID20691478
PMCPMC3038623
OpenAlexW1992008772

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.