Evidence map›Paper›PMID 20690043›Full record

ArticleJournal of structural and functional genomics2010

The New York Consortium on Membrane Protein Structure (NYCOMPS): a high-throughput platform for structural genomics of integral membrane proteins.

James Love, Filippo Mancia, Lawrence Shapiro, Marco Punta, Burkhard Rost, Mark Girvin, Da-Neng Wang, Ming Zhou, John F Hunt, Thomas Szyperski and 7 more

Abstract read
In one paragraph

Article in Journal of structural and functional genomics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed.

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  5. Insight into the mechanism of HProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
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  9. Solvent accessibility changes in a NaThe Journal of biological chemistry · 2020
    Article
  10. Article
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  17. Atomic-level analysis of membrane-protein structure.Nature structural & molecular biology · 2016
    Review
  18. Article
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  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

James LoveNew York Structural Biology Center, New York, 10027, USA.
Filippo Mancia
Lawrence Shapiro
Marco Punta
Burkhard Rost
Mark Girvin
Da-Neng Wang
Ming Zhou
John F Hunt
Thomas Szyperski
Eric Gouaux
Roderick MacKinnon
Ann McDermott
Barry Honig
Masayori Inouye
Gaetano Montelione
Wayne A Hendrickson

Funding

Sub-project 9U54GM074958 · NIGMS · RUTGERS THE ST UNIV OF NJ NEW BRUNSWICK · PI KENNEDY, MICHAEL ALLEN · 2005 to 2009
$56.6M
University of Georgia ProjectU54GM094597 · NIGMS · RUTGERS, THE STATE UNIV OF N.J. · PI ROST, BURKHARD · 2010 to 2014
$36.9M
Sub 9 at AECMU54GM075026 · NIGMS · NEW YORK STRUCTURAL BIOLOGY CENTER · PI GOUAUX, JAMES E · 2005 to 2009
$16.8M
NIGMS NIH HHS U54 GM074958NIGMS NIH HHS U54 GM075026NIGMS NIH HHS U54GM075026NIGMS NIH HHS U54 GM094597
6 · The paper itself

Abstract

The New York Consortium on Membrane Protein Structure (NYCOMPS) was formed to accelerate the acquisition of structural information on membrane proteins by applying a structural genomics approach. NYCOMPS comprises a bioinformatics group, a centralized facility operating a high-throughput cloning and screening pipeline, a set of associated wet labs that perform high-level protein production and structure determination by x-ray crystallography and NMR, and a set of investigators focused on methods development. In the first three years of operation, the NYCOMPS pipeline has so far produced and screened 7,250 expression constructs for 8,045 target proteins. Approximately 600 of these verified targets were scaled up to levels required for structural studies, so far yielding 24 membrane protein crystals. Here we describe the overall structure of NYCOMPS and provide details on the high-throughput pipeline.

Indexed as

Cells, CulturedComputational BiologyCrystallography, X-RayGenomeGenomicsMembrane ProteinsNew YorkProtein Structure, SecondaryMembrane Proteins

Identifiers

PMID20690043
PMCPMC3099345

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.