Evidence map›Paper›PMID 20689842›Full record

ArticlePloS one2010

Peroxidase profiling reveals genetic linkage between peroxidase gene clusters and basal host and non-host resistance to rusts and mildew in barley.

Ana M González, Thierry C Marcel, Zuzana Kohutova, Piet Stam, C Gerard van der Linden, Rients E Niks

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
5.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 45 citations in OpenAlex.

  1. Article
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  4. Protocorm-like-body extract ofFrontiers in plant science · 2022
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  5. Article
  6. Article
  7. Mapping resistance to powdery mildew in barley reveals a large-effect nonhost resistance QTL.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2018
    Article
  8. Article
  9. Haplotype divergence and multiple candidate genes at Rphq2, a partial resistance QTL of barley to Puccinia hordei.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2016
    Article
  10. Article
  11. Article
  12. Disease Resistance Gene Analogs (RGAs) in Plants.International journal of molecular sciences · 2015
    Review
  13. Article
  14. Golden SusPtrit: a genetically well transformable barley line for studies on the resistance to rust fungi.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2014
    Article
  15. Identification of RFLP and NBS/PK profiling markers for disease resistance loci in genetic maps of oats.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2013
    Article
  16. Mapping of the S. demissum late blight resistance gene R8 to a new locus on chromosome IX.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2011
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 2 countries.

Ana M GonzálezLaboratory of Plant Breeding, Wageningen University and Research Center, Wageningen, The Netherlands.
Thierry C Marcel
Zuzana Kohutova
Piet Stam
C Gerard van der Linden
Rients E Niks
Wageningen University & Research · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundHigher plants possess a large multigene family encoding secreted class III peroxidase (Prx) proteins. Peroxidases appear to be associated with plant disease resistance based on observations of induction during disease challenge and the presence or absence of isozymes in resistant vs susceptible varieties. Despite these associations, there is no evidence that allelic variation of peroxidases directly determines levels of disease resistance. METHODOLOGY/PRINCIPAL

findingsThe current study introduces a new strategy called Prx-Profiling. We showed that with this strategy a large number of peroxidase genes can be mapped on the barley genome. In order to obtain an estimate of the total number of Prx clusters we followed a re-sampling procedure, which indicated that the barley genome contains about 40 peroxidase gene clusters. We examined the association between the Prxs mapped and the QTLs for resistance of barley to homologous and heterologous rusts, and to the barley powdery mildew fungus. We report that 61% of the QTLs for partial resistance to P. hordei, 61% of the QTLs for resistance to B. graminis and 47% of the QTLs for non-host resistance to other Puccinia species co-localize with Prx based markers. CONCLUSIONS/SIGNIFICANCE: We conclude that Prx-Profiling was effective in finding the genetic location of Prx genes on the barley genome. The finding that QTLs for basal resistance to rusts and powdery mildew fungi tend to co-locate with Prx clusters provides a base for exploring the functional role of Prx-related genes in determining natural differences in levels of basal resistance.

Indexed as

Gene Expression ProfilingChromosome MappingGenetic LinkageGenetic MarkersGenome, PlantHordeumImmunity, InnateMultigene FamilyPeroxidasePlant DiseasesPolymorphism, GeneticQuantitative Trait LociSequence Analysis, DNAGenetic MarkersPeroxidase

Identifiers

PMID20689842
PMCPMC2914007
OpenAlexW1993035920

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.