Evidence map›Paper›PMID 20686783›Full record

ReviewPflugers Archiv : European journal of physiology2010

A comprehensive analysis of gene expression profiles in distal parts of the mouse renal tubule.

Sylvain Pradervand, Annie Zuber Mercier, Gabriel Centeno, Olivier Bonny, Dmitri Firsov

Open access · greenAbstract readReview
PubMed Publisher
In one paragraph

Review in Pflugers Archiv : European journal of physiology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 34 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Recapitulating kidney development: Progress and challenges.Seminars in cell & developmental biology · 2019
    Review
  7. Review
  8. Article
  9. Circadian rhythms and the kidney.Nature reviews. Nephrology · 2018
    Review
  10. Article
  11. Adhesion GPCRs in Kidney Development and Disease.Frontiers in cell and developmental biology · 2018
    Review
  12. Article
  13. Review
  14. RNA sequencing of the nephron transcriptome: a technical note.Kidney research and clinical practice · 2015
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Sylvain PradervandLausanne Genomic Technologies Facility, Center for Integrative Genomics, University of Lausanne, 1015 Lausanne, Switzerland.
Annie Zuber Mercier
Gabriel Centeno
Olivier Bonny
Dmitri Firsov
University of Lausanne · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The distal parts of the renal tubule play a critical role in maintaining homeostasis of extracellular fluids. In this review, we present an in-depth analysis of microarray-based gene expression profiles available for microdissected mouse distal nephron segments, i.e., the distal convoluted tubule (DCT) and the connecting tubule (CNT), and for the cortical portion of the collecting duct (CCD; Zuber et al., Proc Natl Acad Sci USA 106:16523-16528, 2009). Classification of expressed transcripts in 14 major functional gene categories demonstrated that all principal proteins involved in maintaining the salt and water balance are represented by highly abundant transcripts. However, a significant number of transcripts belonging, for instance, to categories of G-protein-coupled receptors or serine/threonine kinases exhibit high expression levels but remain unassigned to a specific renal function. We also established a list of genes differentially expressed between the DCT/CNT and the CCD. This list is enriched by genes related to segment-specific transport functions and by transcription factors directing the development of the distal nephron or collecting ducts. Collectively, this in silico analysis provides comprehensive information about relative abundance and tissue specificity of the DCT/CNT and the CCD expressed transcripts and identifies new candidate genes for renal homeostasis.

Indexed as

Gene Expression ProfilingAdaptor Proteins, Vesicular TransportA Kinase Anchor ProteinsAnimalsClathrinCytoskeletal ProteinsGTP PhosphohydrolasesKidney Tubules, CollectingKidney Tubules, DistalMembrane Transport ProteinsMiceMonomeric GTP-Binding ProteinsNephronsPhospholipasesPhosphoprotein PhosphatasesProtein Array AnalysisAdaptor Proteins, Vesicular TransportA Kinase Anchor ProteinsClathrinCytoskeletal ProteinsGTP PhosphohydrolasesMembrane Transport ProteinsMonomeric GTP-Binding ProteinsPhospholipasesPhosphoprotein PhosphatasesProtein Serine-Threonine KinasesProtein-Tyrosine KinasesReceptor Protein-Tyrosine KinasesReceptors, G-Protein-CoupledSNARE ProteinsTranscription Factors

Identifiers

PMID20686783
OpenAlexW1969948953

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.