Evidence map›Paper›PMID 20686667›Full record

ArticlePLoS pathogens2010

The role of coupled positive feedback in the expression of the SPI1 type three secretion system in Salmonella.

Supreet Saini, Jeremy R Ellermeier, James M Slauch, Christopher V Rao

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 69 papers.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed
14.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed, 135 citations in OpenAlex.

  1. Review
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  11. Frontiers in veterinary science · 2024
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  14. International journal of molecular sciences · 2022
    Article
  15. Pervasive transcription enhances the accessibility of H-NS-silenced promoters and generates bistability inProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  16. Article
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  20. Article

9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Supreet SainiDepartment of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.
Jeremy R Ellermeier
James M Slauch
Christopher V Rao
University of Illinois Urbana-Champaign · US

Funding

CHEMOTACTIC SENSORY TRANSDUCTION IN BACILLUS SUBTILISR01GM054365 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI ORDAL, GEORGE W. · 1996 to 2012
$4.3M
Functional Analysis of Cu/Zn Superoxide DismutaseR01AI063230 · NIAID · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI SLAUCH, JAMES M. · 2005 to 2009
$1.7M
Multiscale analysis of neutrophil chemotaxis and signal integrationR01GM083601 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI RAO, CHRISTOPHER · 2007 to 2011
$1.4M
Chemotactic sensory transduction in bacillus subtilisR56GM054365 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI ORDAL, GEORGE W. · 2008 to 2008
$445k
NIAID NIH HHS AI63230NIAID NIH HHS R01 AI063230NIGMS NIH HHS GM054365NIGMS NIH HHS GM083601NIGMS NIH HHS R01 GM054365NIGMS NIH HHS R01 GM083601NIGMS NIH HHS R56 GM054365
6 · The paper itself

Abstract

Salmonella enterica serovar Typhimurium is a common food-borne pathogen that induces inflammatory diarrhea and invades intestinal epithelial cells using a type three secretion system (T3SS) encoded within Salmonella pathogenicity island 1 (SPI1). The genes encoding the SPI1 T3SS are tightly regulated by a network of interacting transcriptional regulators involving three coupled positive feedback loops. While the core architecture of the SPI1 gene circuit has been determined, the relative roles of these interacting regulators and associated feedback loops are still unknown. To determine the function of this circuit, we measured gene expression dynamics at both population and single-cell resolution in a number of SPI1 regulatory mutants. Using these data, we constructed a mathematical model of the SPI1 gene circuit. Analysis of the model predicted that the circuit serves two functions. The first is to place a threshold on SPI1 activation, ensuring that the genes encoding the T3SS are expressed only in response to the appropriate combination of environmental and cellular cues. The second is to amplify SPI1 gene expression. To experimentally test these predictions, we rewired the SPI1 genetic circuit by changing its regulatory architecture. This enabled us to directly test our predictions regarding the function of the circuit by varying the strength and dynamics of the activating signal. Collectively, our experimental and computational results enable us to deconstruct this complex circuit and determine the role of its individual components in regulating SPI1 gene expression dynamics.

Indexed as

Feedback, PhysiologicalGene Expression Regulation, BacterialBacterial ProteinsModels, BiologicalModels, TheoreticalMutationSalmonella typhimuriumBacterial ProteinsSpi1 protein, Salmonella

Identifiers

PMID20686667
PMCPMC2912647
OpenAlexW2048628463

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.