Evidence map›Paper›PMID 20686567›Full record

ArticleNature2010

The Amphimedon queenslandica genome and the evolution of animal complexity.

Mansi Srivastava, Oleg Simakov, Jarrod Chapman, Bryony Fahey, Marie E A Gauthier, Therese Mitros, Gemma S Richards, Cecilia Conaco, Michael Dacre, Uffe Hellsten and 23 more

Abstract readComparative Study
In one paragraph

Article in Nature, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 502 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
502citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

502 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Rethinking Plasticity in Sponges.Journal of experimental zoology. Part B, Molecular and developmental evolution · 2026
    Pooled it
  2. Article
  3. Investigations of the Evolved Molecular Basis for Terpenoid Biosynthesis in Marine Sponges.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
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  16. Article
  17. Article
  18. Current zoology · 2025
    Article
  19. Review
  20. Article

442 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

33 authors.

Mansi SrivastavaCenter for Integrative Genomics and Department of Molecular and Cell Biology, University of California, Berkeley, California 94720, USA. mansi@wi.mit.edu
Oleg Simakov
Jarrod Chapman
Bryony Fahey
Marie E A Gauthier
Therese Mitros
Gemma S Richards
Cecilia Conaco
Michael Dacre
Uffe Hellsten
Claire Larroux
Nicholas H Putnam
Mario Stanke
Maja Adamska
Aaron Darling
Sandie M Degnan
Todd H Oakley
David C Plachetzki
Yufeng Zhai
Marcin Adamski
Andrew Calcino
Scott F Cummins
David M Goodstein
Christina Harris
Daniel J Jackson
Sally P Leys
Shengqiang Shu
Ben J Woodcroft
Michel Vervoort
Kenneth S Kosik
Gerard Manning
Bernard M Degnan
Daniel S Rokhsar

Funding

Comparative and Functional Genomics of Protein KinasesR01HG004164 · NHGRI · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI MANNING, GERARD · 2007 to 2010
$1.6M
NHGRI NIH HHS R01 HG004164
6 · The paper itself

Abstract

Sponges are an ancient group of animals that diverged from other metazoans over 600 million years ago. Here we present the draft genome sequence of Amphimedon queenslandica, a demosponge from the Great Barrier Reef, and show that it is remarkably similar to other animal genomes in content, structure and organization. Comparative analysis enabled by the sequencing of the sponge genome reveals genomic events linked to the origin and early evolution of animals, including the appearance, expansion and diversification of pan-metazoan transcription factor, signalling pathway and structural genes. This diverse 'toolkit' of genes correlates with critical aspects of all metazoan body plans, and comprises cell cycle control and growth, development, somatic- and germ-cell specification, cell adhesion, innate immunity and allorecognition. Notably, many of the genes associated with the emergence of animals are also implicated in cancer, which arises from defects in basic processes associated with metazoan multicellularity.

Indexed as

Evolution, MolecularAnimalsApoptosisCell AdhesionCell CycleCell PolarityCell ProliferationGenesGenomeGenomicsHumansImmunity, InnateModels, BiologicalNeuronsPhosphotransferasesPhylogenyPhosphotransferases

Identifiers

PMID20686567
PMCPMC3130542

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.