Evidence map›Paper›PMID 20686566›Full record

ArticleNature2010

From noncoding variant to phenotype via SORT1 at the 1p13 cholesterol locus.

Kiran Musunuru, Alanna Strong, Maria Frank-Kamenetsky, Noemi E Lee, Tim Ahfeldt, Katherine V Sachs, Xiaoyu Li, Hui Li, Nicolas Kuperwasser, Vera M Ruda and 20 more

Open access · greenAbstract read
In one paragraph

Article in Nature, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 670 papers, 7 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
670citing papers in PubMed, 7 pooled it
38.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

670 citing papers in PubMed, 7 syntheses or guidelines pooled it, 1,175 citations in OpenAlex.

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  7. Associations of theFrontiers in genetics · 2021
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  9. Using Polygenic Risk Scores to Refine Risk and Outcomes in High-grade Serous Ovarian Cancer in Australia.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2026
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610 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

30 authors at 9 institutions in 4 countries.

Kiran MusunuruCardiovascular Research Center and Center for Human Genetic Research, Massachusetts General Hospital and Harvard Medical School, Boston, Massachusetts 02114, USA.
Alanna Strong
Maria Frank-Kamenetsky
Noemi E Lee
Tim Ahfeldt
Katherine V Sachs
Xiaoyu Li
Hui Li
Nicolas Kuperwasser
Vera M Ruda
James P Pirruccello
Brian Muchmore
Ludmila Prokunina-Olsson
Jennifer L Hall
Eric E Schadt
Carlos R Morales
Sissel Lund-Katz
Michael C Phillips
Jamie Wong
William Cantley
Timothy Racie
Kenechi G Ejebe
Marju Orho-Melander
Olle Melander
Victor Koteliansky
Kevin Fitzgerald
Ronald M Krauss
Chad A Cowan
Sekar Kathiresan
Daniel J Rader
Alnylam Pharmaceuticals (United States) · USBroad Institute · USHarvard University · USTranslational Therapeutics (United States) · USChildren's Hospital of Philadelphia · USLund University · SENational Institutes of Health · USMcGill University · CASage Bionetworks · US

Funding

VECTOR COREP01HL059407 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI JOHNSTON, JULIE · 1999 to 2019
$35.6M
Pharmacogenomics and Risk of Cardiovascular DiseaseU01HL069757 · NHLBI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI KRAUSS, RONALD M · 2001 to 2009
$24.7M
Multidisciplinary Training in Cardiovascular BiologyT32HL007954 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI DAVIES, PETER FRANCIS · 2000 to 2019
$9.9M
Molecular mechanisms and pathways of novel genomic loci regulating plasma lipidsRC2HL101864 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI RADER, DANIEL JAMES · 2009 to 2010
$4.7M
Genetic and functional analyses of a novel locus associated with LDL-C and MIK99HL098364 · NHLBI · MASSACHUSETTS GENERAL HOSPITAL · PI MUSUNURU, KIRAN · 2010 to 2011
$275k
Intramural NIH HHSNHLBI NIH HHS K99 HL098364NHLBI NIH HHS K99-HL098364NHLBI NIH HHS P01 HL059407NHLBI NIH HHS P01-HL059407NHLBI NIH HHS RC2 HL101864NHLBI NIH HHS RC2-HL101864NHLBI NIH HHS T32 HL007954NHLBI NIH HHS U01 HL069757NHLBI NIH HHS U01-HL069757
6 · The paper itself

Abstract

Recent genome-wide association studies (GWASs) have identified a locus on chromosome 1p13 strongly associated with both plasma low-density lipoprotein cholesterol (LDL-C) and myocardial infarction (MI) in humans. Here we show through a series of studies in human cohorts and human-derived hepatocytes that a common noncoding polymorphism at the 1p13 locus, rs12740374, creates a C/EBP (CCAAT/enhancer binding protein) transcription factor binding site and alters the hepatic expression of the SORT1 gene. With small interfering RNA (siRNA) knockdown and viral overexpression in mouse liver, we demonstrate that Sort1 alters plasma LDL-C and very low-density lipoprotein (VLDL) particle levels by modulating hepatic VLDL secretion. Thus, we provide functional evidence for a novel regulatory pathway for lipoprotein metabolism and suggest that modulation of this pathway may alter risk for MI in humans. We also demonstrate that common noncoding DNA variants identified by GWASs can directly contribute to clinical phenotypes.

Indexed as

Adaptor Proteins, Vesicular TransportAnimalsBase SequenceBinding SitesCCAAT-Enhancer-Binding ProteinsCells, CulturedCholesterol, LDLChromosomes, Human, Pair 1Cohort StudiesCoronary Artery DiseaseEuropeGene Expression RegulationGene Knockdown TechniquesGenetic Predisposition to DiseaseGenome-Wide Association StudyHaplotypesAdaptor Proteins, Vesicular TransportCCAAT-Enhancer-Binding ProteinsCholesterol, LDLLipidsLipoproteins, VLDLSortilin

Identifiers

PMID20686566
PMCPMC3062476
OpenAlexW2152435464

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.