Evidence map›Paper›PMID 20685133›Full record

ArticleJournal of the American Society for Mass Spectrometry2010

Mass spectrometry guided in situ proteolysis to obtain crystals for X-ray structure determination.

Tarun Gheyi, Logan Rodgers, Richard Romero, J Michael Sauder, Stephen K Burley

Abstract read
In one paragraph

Article in Journal of the American Society for Mass Spectrometry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Protein stability: a crystallographer's perspective.Acta crystallographica. Section F, Structural biology communications · 2016
    Review
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Tarun GheyiNew York SGX Research Center for Structural Genomics, Structural Biology, Eli Lilly and Company, Lilly Biotechnology Center, San Diego, California 92121, USA. Gheyi_Tarun@lilly.com
Logan Rodgers
Richard Romero
J Michael Sauder
Stephen K Burley

Funding

SUBPROJECT 5U54GM074945 · NIGMS · SGX PHARMACEUTICALS, INC. · PI BURLEY, STEPHEN KEVIN · 2005 to 2009
$46.2M
NIGMS NIH HHS U54 GM074945
6 · The paper itself

Abstract

A strategy for increasing the efficiency of protein crystallization/structure determination with mass spectrometry has been developed. This approach combines insights from limited proteolysis/mass spectrometry and crystallization via in situ proteolysis. The procedure seeks to identify protease-resistant polypeptide chain segments from purified proteins on the time-scale of crystal formation, and subsequently crystallizing the target protein in the presence of the optimal protease at the right relative concentration. We report our experience with 10 proteins of unknown structure, two of which yielded high-resolution X-ray structures. The advantage of this approach comes from its ability to select only those structure determination candidates that are likely to benefit from application of in situ proteolysis, using conditions most likely to result in formation of a stable proteolytic digestion product suitable for crystallization.

Indexed as

Protein ConformationProteinsCrystallizationCrystallography, X-RayEscherichia coli ProteinsMass SpectrometryPeptide FragmentsPeptide HydrolasesEscherichia coli ProteinsPeptide FragmentsPeptide HydrolasesProteins

Identifiers

PMID20685133
PMCPMC2963156

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.