Evidence map›Paper›PMID 20682788›Full record

ArticleThe Journal of biological chemistry2010

Root secretion of defense-related proteins is development-dependent and correlated with flowering time.

Clelia De-la-Peña, Dayakar V Badri, Zhentian Lei, Bonnie S Watson, Marcelo M Brandão, Marcio C Silva-Filho, Lloyd W Sumner, Jorge M Vivanco

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
6.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 120 citations in OpenAlex.

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  12. Putative LysM Effectors Contribute to Fungal Lifestyle.International journal of molecular sciences · 2021
    Article
  13. Article
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  15. Spatiotemporal Dynamics of Maize (Frontiers in microbiology · 2021
    Review
  16. Article
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  18. The Arabidopsis Hypoxia InducibleNon-coding RNA · 2020
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Clelia De-la-PeñaDepartment of Horticulture and Landscape Architecture and Center for Rhizosphere Biology, Colorado State University, Fort Collins, Colorado 80523, USA.
Dayakar V Badri
Zhentian Lei
Bonnie S Watson
Marcelo M Brandão
Marcio C Silva-Filho
Lloyd W Sumner
Jorge M Vivanco
Noble Research Institute · USColorado State University · USUniversidade de São Paulo · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Proteins found in the root exudates are thought to play a role in the interactions between plants and soil organisms. To gain a better understanding of protein secretion by roots, we conducted a systematic proteomic analysis of the root exudates of Arabidopsis thaliana at different plant developmental stages. In total, we identified 111 proteins secreted by roots, the majority of which were exuded constitutively during all stages of development. However, defense-related proteins such as chitinases, glucanases, myrosinases, and others showed enhanced secretion during flowering. Defense-impaired mutants npr1-1 and NahG showed lower levels of secretion of defense proteins at flowering compared with the wild type. The flowering-defective mutants fca-1, stm-4, and co-1 showed almost undetectable levels of defense proteins in their root exudates at similar time points. In contrast, root secretions of defense-enhanced cpr5-2 mutants showed higher levels of defense proteins. The proteomics data were positively correlated with enzymatic activity assays for defense proteins and with in silico gene expression analysis of genes specifically expressed in roots of Arabidopsis. In conclusion, our results show a clear correlation between defense-related proteins secreted by roots and flowering time.

Indexed as

ArabidopsisFlowersGene Expression ProfilingGene Expression Regulation, PlantPlant ProteinsPlant RootsProteomicsPlant Proteins

Identifiers

PMID20682788
PMCPMC2945560
OpenAlexW2048438540

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.