Evidence map›Paper›PMID 20682701›Full record

ArticleGut2010

The genetic basis of colorectal cancer in a population-based incident cohort with a high rate of familial disease.

M O Woods, H B Younghusband, P S Parfrey, S Gallinger, J McLaughlin, E Dicks, S Stuckless, A Pollett, B Bapat, M Mrkonjic and 10 more

Open access · greenAbstract read
In one paragraph

Article in Gut, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed, 2 pooled it
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 2 syntheses or guidelines pooled it, 84 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
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  10. The Roles ofNutrients · 2022
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  16. Genes · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 7 institutions in 2 countries.

M O WoodsDiscipline of Genetics, Health Sciences Centre, St. John's, Newfoundland, Canada. mwoods@mun.ca
H B Younghusband
P S Parfrey
S Gallinger
J McLaughlin
E Dicks
S Stuckless
A Pollett
B Bapat
M Mrkonjic
A de la Chapelle
M Clendenning
S N Thibodeau
M Simms
A Dohey
P Williams
D Robb
C Searle
J S Green
R C Green
Memorial University of Newfoundland · CAUniversity of Toronto · CAThe Ohio State University · USCancer Care Ontario · CAMayo Clinic · USMount Sinai Hospital · CASt. John’s Health Sciences Centre · CA

Funding

Translational Therapeutics Research Program (TT)P30CA016058 · NCI · OHIO STATE UNIVERSITY · PI Tasleem J Padamsee · 1985 to 2026
$132.3M
CIHR CRT-43821NCI NIH HHS CA16058NCI NIH HHS P30 CA016058
6 · The paper itself

Abstract

BACKGROUND AND

aimsColorectal cancer (CRC) is the second most frequent cancer in developed countries. Newfoundland has the highest incidence of CRC in Canada and the highest rate of familial CRC yet reported in the world. To determine the impact of mutations in known CRC susceptibility genes and the contribution of the known pathways to the development of hereditary CRC, an incident cohort of 750 patients with CRC (708 different families) from the Newfoundland population was studied.

methodsMicrosatellite instability (MSI) testing was performed on tumours, together with immunohistochemistry analysis for mismatch repair (MMR) genes. Where indicated, DNA sequencing and multiplex ligation-dependent probe amplifications of MMR genes and APC was undertaken. DNA from all patients was screened for MUTYH mutations. The presence of the BRAF variant, p.V600E, and of MLH1 promoter methylation was also tested in tumours.

results4.6% of patients fulfilled the Amsterdam criteria (AC), and an additional 44.6% fulfilled the revised Bethesda criteria. MSI-high (MSI-H) was observed in 10.7% (n=78) of 732 tumours. In 3.6% (n=27) of patients, CRC was attributed to 12 different inherited mutations in six known CRC-related genes associated with chromosomal instability or MSI pathways. Seven patients (0.9%) carried a mutation in APC or biallelic mutations in MUTYH. Of 20 patients (2.7%) with mutations in MMR genes, 14 (70%) had one of two MSH2 founder mutations. 17 of 28 (61%) AC families did not have a genetic cause identified, of which 15 kindreds fulfilled the criteria for familial CRC type X (FCCTX).

conclusionsFounder mutations accounted for only 2.1% of cases and this was insufficient to explain the high rate of familial CRC. Many of the families classified as FCCTX may have highly penetrant mutations segregating in a Mendelian-like manner. These families will be important for identifying additional CRC susceptibility loci.

Indexed as

Adaptor Proteins, Signal TransducingAdultAgedAge DistributionColorectal NeoplasmsDNA MethylationDNA Mismatch RepairDNA, NeoplasmFemaleFounder EffectGenetic Predisposition to DiseaseHumansMaleMicrosatellite InstabilityMiddle AgedMutationAdaptor Proteins, Signal TransducingBRAF protein, humanDNA, NeoplasmMLH1 protein, humanMutL Protein Homolog 1Neoplasm ProteinsNuclear ProteinsProto-Oncogene Proteins B-raf

Identifiers

PMID20682701
PMCPMC3047452
OpenAlexW2153928454

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.