Evidence map›Paper›PMID 20682559›Full record

ArticleNucleic acids research2010

Microarray-based STR genotyping using RecA-mediated ligation.

David Herrmann, Emily Rose, Uwe Müller, Robert Wagner

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.1field-weighted citation impact, top 46% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 6 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

David HerrmannGene Check Inc., Greeley, CO 80634 and UWILA International Consulting, Alachua, FL 32615, USA.
Emily Rose
Uwe Müller
Robert Wagner
Gene Check (United States) · US

Funding

Microarray based STR genotyping utilizing RecA-mediated ligationR44HG004679 · NHGRI · GENE CHECK, INC. · PI WAGNER, ROBERT E · 2010 to 2011
$798k
A microarray based STR genotyping system utilizing RecA-mediated ligation and nanR43HG004679 · NHGRI · GENE CHECK, INC. · PI WAGNER, ROBERT E · 2008 to 2008
$226k
NHGRI NIH HHS 1R43HG004679-01NHGRI NIH HHS R43 HG004679NHGRI NIH HHS R44 HG004679
6 · The paper itself

Abstract

We describe a novel assay capable of accurately determining the length of short tandem repeat (STR) alleles. STR genotyping is achieved utilizing RecA-mediated ligation (RML), which combines the high fidelity of RecA-mediated homology searching with allele-specific ligation. RecA catalyzes the pairing of synthetic oligonucleotides with one strand of a double-stranded DNA target, in this case a PCR amplicon. Ligation occurs only when two adjacent oligonucleotides are base paired to the STR region without any overlap or gap. RecA activity is required to overcome the inherent difficulty of annealing repeated sequences in register. This assay is capable of determining STR genotypes of human samples, is easily adapted to high throughput or automated systems and can have widespread utility in diagnostic and forensic applications.

Indexed as

Microsatellite RepeatsAllelesAutoantigensGenotypeHumansIodide PeroxidaseIron-Binding ProteinsOligonucleotide Array Sequence AnalysisOligonucleotidesPolymerase Chain ReactionRec A RecombinasesAutoantigensIodide PeroxidaseIron-Binding ProteinsOligonucleotidesRec A RecombinasesTPO protein, human

Identifiers

PMID20682559
PMCPMC2943619
OpenAlexW2079792520

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.