Evidence map›Paper›PMID 20679481›Full record

ArticleMolecular and cellular biology2010

MeCP2 binds cooperatively to its substrate and competes with histone H1 for chromatin binding sites.

Rajarshi P Ghosh, Rachel A Horowitz-Scherer, Tatiana Nikitina, Luda S Shlyakhtenko, Christopher L Woodcock

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 80 papers.

0numbers the graph read from it
0cells of the map it votes in
80citing papers in PubMed
6.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

80 citing papers in PubMed, 144 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Epigenetics in rare neurological diseases.Frontiers in cell and developmental biology · 2024
    Review
  18. Article
  19. Review
  20. Review

20 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Rajarshi P GhoshProgram in Molecular and Cellular Biology, University of Massachusetts, 611 N. Pleasant Street, Amherst, MA 01003, USA.
Rachel A Horowitz-Scherer
Tatiana Nikitina
Luda S Shlyakhtenko
Christopher L Woodcock
University of Massachusetts Amherst · USUniversity of Nebraska Medical Center · US

Funding

Role of MeCP2 as a Chromatin Architectural ProteinR01GM070897 · NIGMS · UNIVERSITY OF MASSACHUSETTS AMHERST · PI WOODCOCK, CHRISTOPHER L. · 2004 to 2007
$1.0M
NIGMS NIH HHS GM070897NIGMS NIH HHS R01 GM070897
6 · The paper itself

Abstract

Sporadic mutations in the hMeCP2 gene, coding for a protein that preferentially binds symmetrically methylated CpGs, result in the severe neurological disorder Rett syndrome (RTT). In the present work, employing a wide range of experimental approaches, we shed new light on the many levels of MeCP2 interaction with DNA and chromatin. We show that strong methylation-independent as well as methylation-dependent binding by MeCP2 is influenced by DNA length. Although MeCP2 is strictly monomeric in solution, its binding to DNA is cooperative, with dimeric binding strongly correlated with methylation density, and strengthened by nearby A/T repeats. Dimeric binding is abolished in the F155S and R294X severe RTT mutants. MeCP2 also binds chromatin in vitro, resulting in compaction-related changes in nucleosome architecture that resemble the classical zigzag motif induced by histone H1 and considered important for 30-nm-fiber formation. In vivo chromatin binding kinetics and in vitro steady-state nucleosome binding of both MeCP2 and H1 provide strong evidence for competition between MeCP2 and H1 for common binding sites. This suggests that chromatin binding by MeCP2 and H1 in vivo should be viewed in the context of competitive multifactorial regulation.

Indexed as

AnimalsAT Rich SequenceAzacitidineBALB 3T3 CellsBinding, CompetitiveBinding SitesChromatinDecitabineDNADNA MethylationEnzyme InhibitorsFluorescence PolarizationGreen Fluorescent ProteinsHistonesHumansMethyl-CpG-Binding Protein 2AzacitidineChromatinDecitabineDNAEnzyme InhibitorsGreen Fluorescent ProteinsHistonesMECP2 protein, humanMethyl-CpG-Binding Protein 2Nucleosomes

Identifiers

PMID20679481
PMCPMC2950531
OpenAlexW2102858085

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.