Evidence map›Paper›PMID 20678215›Full record

ArticleBMC developmental biology2010

Distance measurements via the morphogen gradient of Bicoid in Drosophila embryos.

Feng He, Ying Wen, David Cheung, Jingyuan Deng, Long J Lu, Renjie Jiao, Jun Ma

Abstract read
In one paragraph

Article in BMC developmental biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

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  7. The importance of geometry in mathematical models of developing systems.Current opinion in genetics & development · 2012
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Feng HeState Key Laboratory of Brain and Cognitive Science Institute of Biophysics Chinese Academy of Sciences 15 Datun Road Beijing 100101, China.
Ying Wen
David Cheung
Jingyuan Deng
Long J Lu
Renjie Jiao
Jun Ma

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundPatterning along the anterior-posterior (A-P) axis in Drosophila embryos is instructed by the morphogen gradient of Bicoid (Bcd). Despite extensive studies of this morphogen, how embryo geometry may affect gradient formation and target responses has not been investigated experimentally.

resultsIn this report, we systematically compare the Bcd gradient profiles and its target expression patterns on the dorsal and ventral sides of the embryo. Our results support a hypothesis that proper distance measurement and the encoded positional information of the Bcd gradient are along the perimeter of the embryo. Our results also reveal that the dorsal and ventral sides of the embryo have a fundamentally similar relationship between Bcd and its target Hunchback (Hb), suggesting that Hb expression properties on the two sides of the embryo can be directly traced to Bcd gradient properties. Our 3-D simulation studies show that a curvature difference between the two sides of an embryo is sufficient to generate Bcd gradient properties that are consistent with experimental observations.

conclusionsThe findings described in this report provide a first quantitative, experimental evaluation of embryo geometry on Bcd gradient formation and target responses. They demonstrate that the physical features of an embryo, such as its shape, are integral to how pattern is formed.

Indexed as

AnimalsBody PatterningComputer SimulationDNA-Binding ProteinsDrosophila melanogasterDrosophila ProteinsEmbryo, NonmammalianFemaleHomeodomain ProteinsTrans-ActivatorsTranscription Factorsbcd protein, DrosophilaDNA-Binding ProteinsDrosophila Proteinshb protein, DrosophilaHomeodomain ProteinsTrans-ActivatorsTranscription Factors

Identifiers

PMID20678215
PMCPMC2919471

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.