Evidence map›Paper›PMID 20677981›Full record

ArticleFoodborne pathogens and disease2010

Transcriptome analysis of alkali shock and alkali adaptation in Listeria monocytogenes 10403S.

Efstathios S Giotis, Arunachalam Muthaiyan, Senthil Natesan, Brian J Wilkinson, Ian S Blair, David A McDowell

Abstract read
In one paragraph

Article in Foodborne pathogens and disease, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Genomic and pathogenicity islands ofFrontiers in molecular biosciences · 2023
    Review
  4. Frontiers in microbiology · 2022
    Review
  5. The repertoire of ABC proteins inComputational and structural biotechnology journal · 2021
    Article
  6. Adaptive Response ofFrontiers in microbiology · 2021
    Review
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Efstathios S GiotisMicrobiology Group, Department of Biological Sciences, Illinois State University, Normal, IL, USA.
Arunachalam Muthaiyan
Senthil Natesan
Brian J Wilkinson
Ian S Blair
David A McDowell

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Alkali stress is an important means of inactivating undesirable pathogens in a wide range of situations. Unfortunately, Listeria monocytogenes can launch an alkaline tolerance response, significantly increasing persistence of the pathogen in such environments. This study compared transcriptome patterns of alkali and non-alkali-stressed L. monocytogenes 10403S cells, to elucidate the mechanisms by which Listeria adapts and/or grows during short- or long-term alkali stress. Transcription profiles associated with alkali shock (AS) were obtained by DNA microarray analysis of midexponential cells suspended in pH 9 media for 15, 30, or 60 min. Transcription profiles associated with alkali adaptation (AA) were obtained similarly from cells grown to midexponential phase at pH 9. Comparison of AS and AA transcription profiles with control cell profiles identified a high number of differentially regulated open-reading frames in all tested conditions. Rapid (15 min) changes in expression included upregulation of genes encoding for multiple metabolic pathways (including those associated with Na+/H+ antiporters), ATP-binding cassette transporters of functional compatible solutes, motility, and virulence-associated genes as well as the σ(B) controlled stress resistance network. Slower (30 min and more) responses to AS and adaptation during growth in alkaline conditions (AA) involved a different pattern of changes in mRNA concentrations, and genes involved in proton export.

Indexed as

Gene Expression ProfilingAdaptation, BiologicalGene Expression Regulation, BacterialHydrogen-Ion ConcentrationListeria monocytogenesOligonucleotide Array Sequence AnalysisPolymerase Chain ReactionRNA, BacterialRNA, MessengerRNA, BacterialRNA, Messenger

Identifiers

PMID20677981
PMCPMC3132107

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.