Evidence map›Paper›PMID 20677318›Full record

ArticleChemMedChem2010

The active core in a triazole peptide dual-site antagonist of HIV-1 gp120.

Muddegowda Umashankara, Karyn McFadden, Isaac Zentner, Arne Schön, Srivats Rajagopal, Ferit Tuzer, Syna A Kuriakose, Mark Contarino, Judith Lalonde, Ernesto Freire and 1 more

Abstract read
In one paragraph

Article in ChemMedChem, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
1.1field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Peptide-Based HIV Entry Inhibitors.Advances in experimental medicine and biology · 2022
    Article
  5. Article
  6. Review
  7. Pharmacokinetic stability of macrocyclic peptide triazole HIV-1 inactivators alone and in liposomes.Journal of peptide science : an official publication of the European Peptide Society · 2019
    Article
  8. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Muddegowda UmashankaraDepartment of Biochemistry and Molecular Biology, Drexel University College of Medicine, Philadelphia, PA 19102, USA.
Karyn McFadden
Isaac Zentner
Arne Schön
Srivats Rajagopal
Ferit Tuzer
Syna A Kuriakose
Mark Contarino
Judith Lalonde
Ernesto Freire
Irwin Chaiken
Drexel University · USJohns Hopkins University · USBryn Mawr College · US

Funding

Understanding Envelope Function in HIV-1 Infection: The Design, Synthesis and Validation of Small Molecule HIV-1 Env InhibitorsP01GM056550 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI ABRAMS, CAMERON F · 1997 to 2018
$31.2M
STRUCTURE BASED THERMODYNAMIC STUDIES OF HIV1 PROTEASER01GM057144 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI FREIRE, ERNESTO · 1998 to 2012
$5.8M
CVN-12p1 Chimeras and Combinations for AIDS MicrobiocidesR21AI071965 · NIAID · DREXEL UNIVERSITY · PI CHAIKEN, IRWIN M · 2006 to 2007
$389k
NIAID NIH HHS R21 AI071965NIGMS NIH HHS GM57144NIGMS NIH HHS P01 GM056550NIGMS NIH HHS P01 GM 56550NIGMS NIH HHS R01 GM057144
6 · The paper itself

Abstract

In an effort to identify broadly active inhibitors of HIV-1 entry into host cells, we previously reported a family of dodecamer triazole-peptide conjugates with nanomolar affinity for the viral surface protein gp120. This peptide class exhibits potent antiviral activity and the capacity to simultaneously inhibit interaction of the viral envelope protein with both CD4 and co-receptor. In this investigation, we minimized the structural complexity of the lead triazole inhibitor HNG-156 (peptide 1) to explore the limits of the pharmacophore that enables dual antagonism and to improve opportunities for peptidomimetic design. Truncations of both carboxy- and amino-terminal residues from the parent 12-residue peptide 1 were found to have minimal effects on both affinity and antiviral activity. In contrast, the central triazole(Pro)-Trp cluster at residues 6 and 7 with ferrocenyl-triazole(Pro) (Ftp) was found to be critical for bioactivity. Amino-terminal residues distal to the central triazole(Pro)-Trp sequence tolerated decreasing degrees of side chain variation upon approaching the central cluster. A peptide fragment containing residues 3-7 (Asn-Asn-Ile-Ftp-Trp) exhibited substantial direct binding affinity, antiviral potency, dual receptor site antagonism, and induction of gp120 structuring, all properties that define the functional signature of the parent compound 1. This active core contains a stereochemically specific hydrophobic triazole(Pro)-Trp cluster, with a short N-terminal peptide extension providing groups for potential main chain and side chain hydrogen bonding. The results of this work argue that the pharmacophore for dual antagonism is structurally limited, thereby enhancing the potential to develop minimized peptidomimetic HIV-1 entry inhibitors that simultaneously suppress binding of envelope protein to both of its host cell receptors. The results also argue that the target epitope on gp120 is relatively small, pointing to a localized allosteric inhibition site in the HIV-1 envelope that could be targeted for small-molecule inhibitor discovery.

Indexed as

Amino Acid SequenceAnti-HIV AgentsCatalytic DomainCD4 AntigensHIV-1HIV Envelope Protein gp120HIV InfectionsHumansHydrogen BondingHydrophobic and Hydrophilic InteractionsKineticsMolecular Sequence DataPeptidesSurface Plasmon ResonanceThermodynamicsTriazolesAnti-HIV AgentsCD4 AntigensHIV Envelope Protein gp120PeptidesTriazoles

Identifiers

PMID20677318
PMCPMC3035117
OpenAlexW1964809542

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.