Evidence map›Paper›PMID 20676398›Full record

ArticlePloS one2010

A global metabolic shift is linked to Salmonella multicellular development.

Aaron P White, Aalim M Weljie, Dmitry Apel, Ping Zhang, Rustem Shaykhutdinov, Hans J Vogel, Michael G Surette

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 75 citations in OpenAlex.

  1. Osmotic Stress Adaptation of Poultry-AssociatedFoods (Basel, Switzerland) · 2026
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  3. The Transcription Factor CsgD Contributes to EngineeredInternational journal of molecular sciences · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Aaron P WhiteDepartment of Microbiology and Infectious Diseases, University of Calgary, Calgary, Canada.
Aalim M Weljie
Dmitry Apel
Ping Zhang
Rustem Shaykhutdinov
Hans J Vogel
Michael G Surette
University of Calgary · CA

Funding

Canadian Institutes of Health Research
6 · The paper itself

Abstract

Bacteria can elaborate complex patterns of development that are dictated by temporally ordered patterns of gene expression, typically under the control of a master regulatory pathway. For some processes, such as biofilm development, regulators that initiate the process have been identified but subsequent phenotypic changes such as stress tolerance do not seem to be under the control of these same regulators. A hallmark feature of biofilms is growth within a self-produced extracellular matrix. In this study we used metabolomics to compare Salmonella cells in rdar colony biofilms to isogenic csgD deletion mutants that do not produce an extracellular matrix. The two populations show distinct metabolite profiles. Even though CsgD controls only extracellular matrix production, metabolite signatures associated with cellular adaptations associated with stress tolerances were present in the wild type but not the mutant cells. To further explore these differences we examine the temporal gene expression of genes implicated in biofilm development and stress adaptations. In wild type cells, genes involved in a metabolic shift to gluconeogenesis and various stress-resistance pathways exhibited an ordered expression profile timed with multicellular development even though they are not CsgD regulated. In csgD mutant cells, the ordered expression was lost. We conclude that the induction of these pathways results from production of, and growth within, a self produced matrix rather than elaboration of a defined genetic program. These results predict that common physiological properties of biofilms are induced independently of regulatory pathways that initiate biofilm formation.

Indexed as

ATP-Binding Cassette TransportersBacterial ProteinsBiofilmsGas Chromatography-Mass SpectrometryGluconeogenesisGlycogenMagnetic Resonance SpectroscopyMetabolomicsReactive Oxygen SpeciesSalmonellaSalmonella typhimuriumSequence DeletionATP-Binding Cassette TransportersBacterial ProteinsGlycogenReactive Oxygen Species

Identifiers

PMID20676398
PMCPMC2910731
OpenAlexW2062926135

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.