Evidence map›Paper›PMID 20676100›Full record

ArticleNature structural & molecular biology2010

Hybrid molecular structure of the giant protease tripeptidyl peptidase II.

Crystal K Chuang, Beate Rockel, Gönül Seyit, Peter J Walian, Anne-Marie Schönegge, Jürgen Peters, Petrus H Zwart, Wolfgang Baumeister, Bing K Jap

Open access · greenAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Infinite Assembly of Folded Proteins in Evolution, Disease, and Engineering.Angewandte Chemie (International ed. in English) · 2019
    Review
  5. Article
  6. In situ structural studies of tripeptidyl peptidase II (TPPII) reveal spatial association with proteasomes.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Crystal K ChuangLife Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Beate Rockel
Gönül Seyit
Peter J Walian
Anne-Marie Schönegge
Jürgen Peters
Petrus H Zwart
Wolfgang Baumeister
Bing K Jap
Max Planck Institute of Biochemistry · DELawrence Berkeley National Laboratory · US

Funding

Tripeptidylpeptidase II Structure and AssemblyR01GM083175 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI JAP, BING K. · 2008 to 2011
$1.3M
NIGMS NIH HHS R01 GM083175
6 · The paper itself

Abstract

Tripeptidyl peptidase II (TPP II) is the largest known eukaryotic protease (6 MDa). It is believed to act downstream of the 26S proteasome, cleaving tripeptides from the N termini of longer peptides, and it is implicated in numerous cellular processes. Here we report the structure of Drosophila TPP II determined by a hybrid approach. We solved the structure of the dimer by X-ray crystallography and docked it into the three-dimensional map of the holocomplex, which we obtained by single-particle cryo-electron microscopy. The resulting structure reveals the compartmentalization of the active sites inside a system of chambers and suggests the existence of a molecular ruler determining the size of the cleavage products. Furthermore, the structure suggests a model for activation of TPP II involving the relocation of a flexible loop and a repositioning of the active-site serine, coupling it to holocomplex assembly and active-site sequestration.

Indexed as

Models, MolecularAminopeptidasesAnimalsCatalytic DomainCryoelectron MicroscopyCrystallography, X-RayDipeptidyl-Peptidases and Tripeptidyl-PeptidasesDrosophila melanogasterEnzyme ActivationHoloenzymesProtein MultimerizationProtein Structure, SecondarySerine EndopeptidasesStatic ElectricitySubstrate SpecificitySubtilisinAminopeptidasesDipeptidyl-Peptidases and Tripeptidyl-PeptidasesHoloenzymesSerine EndopeptidasesSubtilisintripeptidyl-peptidase 2

Identifiers

PMID20676100
PMCPMC2939011
OpenAlexW2106833675

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.