Evidence map›Paper›PMID 20675579›Full record

ArticleEukaryotic cell2010

Transcription factors in light and circadian clock signaling networks revealed by genomewide mapping of direct targets for neurospora white collar complex.

Kristina M Smith, Gencer Sancar, Rigzin Dekhang, Christopher M Sullivan, Shaojie Li, Andrew G Tag, Cigdem Sancar, Erin L Bredeweg, Henry D Priest, Ryan F McCormick and 6 more

Abstract read
In one paragraph

Article in Eukaryotic cell, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 124 papers.

0numbers the graph read from it
0cells of the map it votes in
124citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

124 citing papers in PubMed.

  1. Article
  2. Article
  3. A daily cycle of White Collar Complex dephosphorylation sustains circadian rhythmicity inProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Article
  5. Rhythmic Nuclear Import Mediated by Importins Regulates thebioRxiv : the preprint server for biology · 2026
    Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Journal of fungi (Basel, Switzerland) · 2023
    Article
  15. Article
  16. Antisense Transcription of theJournal of biological rhythms · 2023
    Article
  17. Review
  18. Article
  19. Article
  20. Article

64 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Kristina M SmithDepartment of Biochemistry and Biophysics, Oregon State University, Corvallis, 97331-7305, USA.
Gencer Sancar
Rigzin Dekhang
Christopher M Sullivan
Shaojie Li
Andrew G Tag
Cigdem Sancar
Erin L Bredeweg
Henry D Priest
Ryan F McCormick
Terry L Thomas
James C Carrington
Jason E Stajich
Deborah Bell-Pedersen
Michael Brunner
Michael Freitag

Funding

Tools for Functional Analysis and Cell BiologyP01GM068087 · NIGMS · DARTMOUTH COLLEGE · PI DUNLAP, JAY C. · 2004 to 2013
$19.3M
The Circadian Clock in the Context of the Cyanobacterial CellP01NS039546 · NINDS · TEXAS A&M UNIVERSITY SYSTEM · PI THOMAS, TERRY L · 2000 to 2010
$10.6M
Molecular Genetic Analysis of Fungal Circadian RythmsR01GM058529 · NIGMS · TEXAS A&M UNIVERSITY SYSTEM · PI BELL-PEDERSEN, DEBORAH · 1999 to 2017
$4.6M
Genetic Analysis of RNA Virus-Host InteractionR37AI043288 · NIAID · OREGON STATE UNIVERSITY · PI CARRINGTON, JAMES C · 2008 to 2017
$3.1M
GENETIC ANALYSIS OF RNA VIRUS-HOST INTERACTIONR01AI043288 · NIAID · WASHINGTON STATE UNIVERSITY · PI CARRINGTON, JAMES C · 1998 to 2007
$1.7M
Systems Biology of the Circadian Clock Output NetworkR01GM113673 · NIGMS · TEXAS A&M UNIVERSITY · PI BELL-PEDERSEN, DEBORAH, GALAGAN, JAMES E · 2015 to 2018
$1.6M
GENETIC ANALYSIS OF RNA VIRUS-HOST INTERACTIONR21AI043288 · NIAID · WASHINGTON STATE UNIVERSITY · PI CARRINGTON, JAMES C · 1997 to 1997
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NIAID NIH HHS AI43288NIAID NIH HHS R01 AI043288NIAID NIH HHS R21 AI043288NIAID NIH HHS R37 AI043288NIGMS NIH HHS 2P01 GM068087NIGMS NIH HHS GM58529NIGMS NIH HHS P01 GM068087NIGMS NIH HHS R01 GM058529NIGMS NIH HHS R01 GM113673NINDS NIH HHS NS39546NINDS NIH HHS P01 NS039546
6 · The paper itself

Abstract

Light signaling pathways and circadian clocks are inextricably linked and have profound effects on behavior in most organisms. Here, we used chromatin immunoprecipitation (ChIP) sequencing to uncover direct targets of the Neurospora crassa circadian regulator White Collar Complex (WCC). The WCC is a blue-light receptor and the key transcription factor of the circadian oscillator. It controls a transcriptional network that regulates ∼20% of all genes, generating daily rhythms and responses to light. We found that in response to light, WCC binds to hundreds of genomic regions, including the promoters of previously identified clock- and light-regulated genes. We show that WCC directly controls the expression of 24 transcription factor genes, including the clock-controlled adv-1 gene, which controls a circadian output pathway required for daily rhythms in development. Our findings provide links between the key circadian activator and effectors in downstream regulatory pathways.

Indexed as

Circadian ClocksGene Expression Regulation, FungalLightSignal TransductionChromatin ImmunoprecipitationCircadian RhythmFungal ProteinsGene Regulatory NetworksGenome, FungalHigh-Throughput Nucleotide SequencingNeurospora crassaPolymerase Chain ReactionTranscription FactorsFungal ProteinsTranscription Factors

Identifiers

PMID20675579
PMCPMC2950426

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.