Evidence map›Paper›PMID 20674550›Full record

ArticleBiochemical and biophysical research communications2010

Genome-to-function characterization of novel fungal P450 monooxygenases oxidizing polycyclic aromatic hydrocarbons (PAHs).

Khajamohiddin Syed, Harshavardhan Doddapaneni, Venkataramanan Subramanian, Ying Wai Lam, Jagjit S Yadav

Open access · greenAbstract read
In one paragraph

Article in Biochemical and biophysical research communications, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
6.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 121 citations in OpenAlex.

  1. Phenanthrene degradation by a flavoprotein monooxygenase fromApplied and environmental microbiology · 2025
    Article
  2. Review
  3. Article
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  6. Article
  7. Biodegradation of Benzo[a]pyrene by a White-Rot FungusJournal of fungi (Basel, Switzerland) · 2023
    Article
  8. Review
  9. Journal of fungi (Basel, Switzerland) · 2022
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  11. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Khajamohiddin SyedEnvironmental Genetics and Molecular Toxicology Division, Department of Environmental Health, University of Cincinnati College of Medicine, Cincinnati, OH 45267-0056, USA.
Harshavardhan Doddapaneni
Venkataramanan Subramanian
Ying Wai Lam
Jagjit S Yadav
University of Cincinnati · US

Funding

FUNGAL P450 SYSTEMS IN BIODEGRADATION OF HIGHER PAHS-R01ES15543-01R01ES015543 · NIEHS · UNIVERSITY OF CINCINNATI · PI YADAV, JAGJIT S · 2008 to 2011
$1.1M
XENOBIOTIC-OXIDIZING P450 SYSTEM IN A WHITE ROT FUNGUSR01ES010210 · NIEHS · UNIVERSITY OF CINCINNATI · PI YADAV, JAGJIT S · 2001 to 2003
$689k
NIEHS NIH HHS R01 ES010210NIEHS NIH HHS R01 ES015543NIEHS NIH HHS R01ES015543NIEHS NIH HHS R01ES10210
6 · The paper itself

Abstract

Fungi, particularly the white rot basidiomycetes, have an extraordinary capability to degrade and/or mineralize (to CO(2)) the recalcitrant fused-ring high molecular weight (4 aromatic-rings) polycyclic aromatic hydrocarbons (HMW PAHs). Despite over 30years of research demonstrating involvement of P450 monooxygenation reactions in fungal metabolism of HMW PAHs, specific P450 monooxygenases responsible for oxidation of these compounds are not yet known. Here we report the first comprehensive identification and functional characterization of P450 monooxygenases capable of oxidizing different ring-size PAHs in the model white rot fungus Phanerochaete chrysosporium using a successful genome-to-function strategy. In a genome-wide P450 microarray screen, we identified six PAH-responsive P450 genes (Pc-pah1-Pc-pah6) inducible by PAHs of varying ring size, namely naphthalene, phenanthrene, pyrene, and benzo(a)pyrene (BaP). Using a co-expression strategy, cDNAs of the six Pc-Pah P450s were cloned and expressed in Pichia pastoris in conjunction with the homologous P450 oxidoreductase (Pc-POR). Each of the six recombinant P450 monooxygenases showed PAH-oxidizing activity albeit with varying substrate specificity towards PAHs (3-5 rings). All six P450s oxidized pyrene (4-ring) into two monohydroxylated products. Pc-Pah1 and Pc-Pah3 oxidized BaP (5-ring) to 3-hydroxyBaP whereas Pc-Pah4 and Pc-Pah6 oxidized phenanthrene (3-ring) to 3-, 4-, and 9-phenanthrol. These PAH-oxidizing P450s (493-547 aa) are structurally diverse and novel considering their low overall homology (12-23%) to mammalian counterparts. To our knowledge, this is the first report on specific fungal P450 monooxygenases with catalytic activity toward environmentally persistent and highly toxic HMW PAHs.

Indexed as

Biodegradation, EnvironmentalCatalysisCytochrome P-450 Enzyme SystemGenome, FungalGenome-Wide Association StudyMixed Function OxygenasesOxidation-ReductionPhanerochaetePichiaPolycyclic Aromatic HydrocarbonsRecombinant ProteinsSubstrate SpecificityCytochrome P-450 Enzyme SystemMixed Function OxygenasesPolycyclic Aromatic HydrocarbonsRecombinant Proteins

Identifiers

PMID20674550
PMCPMC2943217
OpenAlexW1973235523

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.