Evidence map›Paper›PMID 20670608›Full record

ArticleAnalytical biochemistry2010

Glycosaminoglycan-binding properties and kinetic characterization of human heparin cofactor II expressed in Escherichia coli.

Suryakala Sarilla, Sally Y Habib, Douglas M Tollefsen, David B Friedman, Diana R Arnett, Ingrid M Verhamme

Open access · greenAbstract read
In one paragraph

Article in Analytical biochemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Suryakala SarillaDepartment of Pathology, Vanderbilt University School of Medicine, C3321A Medical Center North, Nashville, TN 37232, USA.
Sally Y Habib
Douglas M Tollefsen
David B Friedman
Diana R Arnett
Ingrid M Verhamme
Vanderbilt University Medical Center · USVanderbilt University · USWashington University in St. Louis · US

Funding

STRUCTURE AND FUNCTION OF HEPARIN COFACTOR IIR01HL055520 · NHLBI · WASHINGTON UNIVERSITY · PI TOLLEFSEN, DOUGLAS M · 1996 to 2010
$5.0M
Mechanisms of Hemostatic Protease Inhibition by SerpinsR01HL080018 · NHLBI · VANDERBILT UNIVERSITY · PI VERHAMME, INGRID M · 2006 to 2010
$1.7M
NHLBI NIH HHS R01 HL055520NHLBI NIH HHS R01 HL 080018NHLBI NIH HHS R01 HL080018NHLBI NIH HHS R01 HL 55520
6 · The paper itself

Abstract

Irreversible inactivation of alpha-thrombin (T) by the serpin, heparin cofactor II (HCII), is accelerated by ternary complex formation with the glycosaminoglycans (GAGs) heparin and dermatan sulfate (DS). Low expression of human HCII in Escherichia coli was optimized by silent mutation of 27 rare codons and five secondary Shine-Dalgarno sequences in the cDNA. The inhibitory activities of recombinant HCII, and native and deglycosylated plasma HCII, and their affinities for heparin and DS were compared. Recombinant and deglycosylated HCII bound heparin with dissociation constants (K(D)) of 6+/-1 and 7+/-1 microM, respectively, approximately 6-fold tighter than plasma HCII, with K(D) 40+/-4 microM. Binding of recombinant and deglycosylated HCII to DS, both with K(D) 4+/-1 microM, was approximately 4-fold tighter than for plasma HCII, with K(D) 15+/-4 microM. Recombinant HCII, lacking N-glycosylation and tyrosine sulfation, inactivated alpha-thrombin with a 1:1 stoichiometry, similar to plasma HCII. Second-order rate constants for thrombin inactivation by recombinant and deglycosylated HCII were comparable, at optimal GAG concentrations that were lower than those for plasma HCII, consistent with its weaker GAG binding. This weaker binding may be attributed to interference of the Asn(169)N-glycan with the HCII heparin-binding site.

Indexed as

Amino Acid SequenceDermatan SulfateEnzyme ActivationEscherichia coliFluorescenceGlycosaminoglycansGlycosylationHeparin Cofactor IIHumansKineticsMolecular Sequence DataMutagenesis, Site-DirectedPeptidesProtein BindingRecombinant ProteinsSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationDermatan SulfateGlycosaminoglycansHeparin Cofactor IIPeptidesRecombinant ProteinsThrombin

Identifiers

PMID20670608
PMCPMC2952836
OpenAlexW2035359564

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.