Evidence map›Paper›PMID 20669948›Full record

ArticleJournal of the American Chemical Society2010

Conserved binding mode of human beta2 adrenergic receptor inverse agonists and antagonist revealed by X-ray crystallography.

Daniel Wacker, Gustavo Fenalti, Monica A Brown, Vsevolod Katritch, Ruben Abagyan, Vadim Cherezov, Raymond C Stevens

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 160 papers.

0numbers the graph read from it
0cells of the map it votes in
160citing papers in PubMed
16.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

160 citing papers in PubMed, 359 citations in OpenAlex.

  1. Article
  2. Article
  3. Factors modulating the assembly of human βNature structural & molecular biology · 2026
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  5. Review
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  12. G Protein-Coupled Receptor-Ligand Pose and Functional Class Prediction.International journal of molecular sciences · 2024
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  13. Article
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  15. Capturing receptor states with glue.Nature chemical biology · 2024
    Article
  16. Cryo-EM structures of human GPR34 enable the identification of selective antagonists.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  17. Molecular Basis of Human Trace Amine-Associated Receptor 1 Activation.bioRxiv : the preprint server for biology · 2023
    Article
  18. A Novel "Activation Switch" Motif Common to All Aminergic Receptors.Journal of chemical information and modeling · 2023
    Review
  19. The dynamics of agonist-βNature chemistry · 2023
    Article
  20. Article

100 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Daniel WackerDepartment of Molecular Biology, The Scripps Research Institute, La Jolla, California 92037, USA.
Gustavo Fenalti
Monica A Brown
Vsevolod Katritch
Ruben Abagyan
Vadim Cherezov
Raymond C Stevens
University of California, San Diego · USScripps Research Institute · US

Funding

JCSG Center:Innovative Membrane Protein Technology (RMI)P50GM073197 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI STEVENS, RAYMOND C · 2004 to 2013
$26.8M
Sub-project 5U54GM074961 · NIGMS · EMERALD BIOSTRUCTURES · PI BATTRELL, CHARLES FRED · 2005 to 2009
$19.3M
Membrane Proteins. Crystallogenesis/X-ray Structure(RMI)R01GM075915 · NIGMS · UNIVERSITY OF LIMERICK · PI CAFFREY, MARTIN D. · 2005 to 2009
$984k
NCI NIH HHS Y1-CO-1020NIGMS NIH HHS GM073197NIGMS NIH HHS GM074961NIGMS NIH HHS GM075915NIGMS NIH HHS P50 GM073197NIGMS NIH HHS R01 GM075915NIGMS NIH HHS U54 GM074961NIGMS NIH HHS Y1-GM-1104
6 · The paper itself

Abstract

G protein-coupled receptors (GPCRs) represent a large fraction of current pharmaceutical targets, and of the GPCRs, the beta(2) adrenergic receptor (beta(2)AR) is one of the most extensively studied. Previously, the X-ray crystal structure of beta(2)AR has been determined in complex with two partial inverse agonists, but the global impact of additional ligands on the structure or local impacts on the binding site are not well-understood. To assess the extent of such ligand-induced conformational differences, we determined the crystal structures of a previously described engineered beta(2)AR construct in complex with two inverse agonists: ICI 118,551 (2.8 A), a recently described compound (2.8 A) (Kolb et al, 2009), and the antagonist alprenolol (3.1 A). The structures show the same overall fold observed for the previous beta(2)AR structures and demonstrate that the ligand binding site can accommodate compounds of different chemical and pharmacological properties with only minor local structural rearrangements. All three compounds contain a hydroxy-amine motif that establishes a conserved hydrogen bond network with the receptor and chemically diverse aromatic moieties that form distinct interactions with beta(2)AR. Furthermore, receptor ligand cross-docking experiments revealed that a single beta(2)AR complex can be suitable for docking of a range of antagonists and inverse agonists but also indicate that additional ligand-receptor structures may be useful to further improve performance for in-silico docking or lead-optimization in drug design.

Indexed as

Adrenergic beta-2 Receptor AgonistsAdrenergic beta-2 Receptor AntagonistsBinding SitesCrystallography, X-RayHumansLigandsModels, MolecularMolecular StructureReceptors, Adrenergic, beta-2Adrenergic beta-2 Receptor AgonistsAdrenergic beta-2 Receptor AntagonistsLigandsReceptors, Adrenergic, beta-2

Identifiers

PMID20669948
PMCPMC2923663
OpenAlexW2060874643

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.