Evidence map›Paper›PMID 20669241›Full record

ArticleProtein science : a publication of the Protein Society2010

Structural and functional characterization of Salmonella enterica serovar Typhimurium YcbL: an unusual Type II glyoxalase.

Anna L Stamp, Paul Owen, Kamel El Omari, Charles E Nichols, Michael Lockyer, Heather K Lamb, Ian G Charles, Alastair R Hawkins, David K Stammers

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 29 citations in OpenAlex.

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  7. Dual Activity BLEG-1 fromInternational journal of molecular sciences · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Anna L StampDivision of Structural Biology, The Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, United Kingdom.
Paul Owen
Kamel El Omari
Charles E Nichols
Michael Lockyer
Heather K Lamb
Ian G Charles
Alastair R Hawkins
David K Stammers
Centre for Human Genetics · GBNewcastle University · GBUniversity of Oxford · GB

Funding

Biotechnology and Biological Sciences Research Council APG19114Wellcome Trust 075491/Z/04
6 · The paper itself

Abstract

YcbL has been annotated as either a metallo-β-lactamase or glyoxalase II (GLX2), both members of the zinc metallohydrolase superfamily, that contains many enzymes with a diverse range of activities. Here, we report crystallographic and biochemical data for Salmonella enterica serovar Typhimurium YcbL that establishes it as GLX2, which differs in certain structural and functional properties compared with previously known examples. These features include the insertion of an α-helix after residue 87 in YcbL and truncation of the C-terminal domain, which leads to the loss of some recognition determinants for the glutathione substrate. Despite these changes, YcbL has robust GLX2 activity. A further difference is that the YcbL structure contains only a single bound metal ion rather than the dual site normally observed for GLX2s. Activity assays in the presence of various metal ions indicate an increase in activity above basal levels in the presence of manganous and ferrous ions. Thus, YcbL represents a novel member of the GLX2 family.

Indexed as

Protein Structure, TertiaryAmino Acid SequenceBacterial ProteinsBinding SitesCrystallography, X-RayEnzyme AssaysHydroxyacylglutathione HydrolaseKineticsMetalsModels, MolecularMolecular Sequence DataProtein FoldingProtein Structure, SecondarySalmonella typhimuriumSequence Homology, Amino AcidSubstrate SpecificityBacterial ProteinsHydroxyacylglutathione HydrolaseMetalsThiolester HydrolasesZinc

Identifiers

PMID20669241
PMCPMC2998724
OpenAlexW1566084599

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.