Evidence map›Paper›PMID 20669149›Full record

ArticleProtein science : a publication of the Protein Society2010

Non-3D domain swapped crystal structure of truncated zebrafish alphaA crystallin.

A Laganowsky, D Eisenberg

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 53 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Hydrophobic residues of melittin mediate its binding to αA-crystallin.Protein science : a publication of the Protein Society · 2020
    Article
  7. Article
  8. Small heat shock proteins: Simplicity meets complexity.The Journal of biological chemistry · 2019
    Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Review
  15. The structured core domain of αB-crystallin can prevent amyloid fibrillation and associated toxicity.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  16. Article
  17. Article
  18. C-terminal interactions mediate the quaternary dynamics of αB-crystallin.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2013
    Article
  19. Evolution of crystallins for a role in the vertebrate eye lens.Protein science : a publication of the Protein Society · 2013
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

A LaganowskyUCLA-DOE, Institute for Genomics and Proteomics, Los Angeles, California 90095-1570, USA.
D Eisenberg
Howard Hughes Medical Institute · US

Funding

Y-FAMILY POLYMERASES AND CO-FACTORS IN TRANSLESION REPLICATIONP41RR015301 · NCRR · CORNELL UNIVERSITY ITHACA · PI EISENBERG, DAVID · 2001 to 2011
$28.2M
CHEMISTRY BIOLOGY INTERFACE TRAINING PROGRAMT32GM008496 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI MAYNARD, HEATHER D · 1993 to 2019
$6.3M
NCRR NIH HHS RR-15301NIGMS NIH HHS 5T32GM008496
6 · The paper itself

Abstract

In previous work on truncated alpha crystallins (Laganowsky et al., Protein Sci 2010; 19:1031-1043), we determined crystal structures of the alpha crystallin core, a seven beta-stranded immunoglobulin-like domain, with its conserved C-terminal extension. These extensions swap into neighboring cores forming oligomeric assemblies. The extension is palindromic in sequence, binding in either of two directions. Here, we report the crystal structure of a truncated alphaA crystallin (AAC) from zebrafish (Danio rerio) revealing C-terminal extensions in a non three-dimensional (3D) domain swapped, "closed" state. The extension is quasi-palindromic, bound within its own zebrafish core domain, lying in the opposite direction to that of bovine AAC, which is bound within an adjacent core domain (Laganowsky et al., Protein Sci 2010; 19:1031-1043). Our findings establish that the C-terminal extension of alpha crystallin proteins can be either 3D domain swapped or non-3D domain swapped. This duality provides another molecular mechanism for alpha crystallin proteins to maintain the polydispersity that is crucial for eye lens transparency.

Indexed as

Protein Structure, Tertiaryalpha-Crystallin A ChainAmino Acid SequenceAnimalsBinding SitesCattleCrystallography, X-RayHydrogen BondingModels, MolecularMolecular Sequence DataPeptide FragmentsProtein ConformationProtein MultimerizationSequence Homology, Amino AcidZebrafishZebrafish Proteinsalpha-Crystallin A ChainPeptide FragmentsZebrafish Proteins

Identifiers

PMID20669149
PMCPMC2998731
OpenAlexW2168196673

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.