Evidence map›Paper›PMID 20667830›Full record

ArticleThe Journal of biological chemistry2010

NMR structure and ion channel activity of the p7 protein from hepatitis C virus.

Roland Montserret, Nathalie Saint, Christophe Vanbelle, Andrés Gerardo Salvay, Jean-Pierre Simorre, Christine Ebel, Nicolas Sapay, Jean-Guillaume Renisio, Anja Böckmann, Eike Steinmann and 4 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 69 papers.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed
7.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed, 136 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Viroporins: Structure, function, and their role in the life cycle of SARS-CoV-2.The international journal of biochemistry & cell biology · 2022
    Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
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  13. Article
  14. Review
  15. Article
  16. Review
  17. All-atom virus simulations.Current opinion in virology · 2018
    Review
  18. Review
  19. Article
  20. Article

9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 3 countries.

Roland MontserretInstitut de Biologie et Chimie des Protéines, UMR 5086, CNRS, Université de Lyon, IFR128 BioSciences Gerland-Lyon Sud, 69367 Lyon, France.
Nathalie Saint
Christophe Vanbelle
Andrés Gerardo Salvay
Jean-Pierre Simorre
Christine Ebel
Nicolas Sapay
Jean-Guillaume Renisio
Anja Böckmann
Eike Steinmann
Thomas Pietschmann
Jean Dubuisson
Christophe Chipot
François Penin
Université Claude Bernard Lyon 1 · FRCentre National de la Recherche Scientifique · FRCenter for Experimental and Clinical Infection Research · DE

Funding

Howard Hughes Medical Institute
6 · The paper itself

Abstract

The small membrane protein p7 of hepatitis C virus forms oligomers and exhibits ion channel activity essential for virus infectivity. These viroporin features render p7 an attractive target for antiviral drug development. In this study, p7 from strain HCV-J (genotype 1b) was chemically synthesized and purified for ion channel activity measurements and structure analyses. p7 forms cation-selective ion channels in planar lipid bilayers and at the single-channel level by the patch clamp technique. Ion channel activity was shown to be inhibited by hexamethylene amiloride but not by amantadine. Circular dichroism analyses revealed that the structure of p7 is mainly α-helical, irrespective of the membrane mimetic medium (e.g. lysolipids, detergents, or organic solvent/water mixtures). The secondary structure elements of the monomeric form of p7 were determined by (1)H and (13)C NMR in trifluoroethanol/water mixtures. Molecular dynamics simulations in a model membrane were combined synergistically with structural data obtained from NMR experiments. This approach allowed us to determine the secondary structure elements of p7, which significantly differ from predictions, and to propose a three-dimensional model of the monomeric form of p7 associated with the phospholipid bilayer. These studies revealed the presence of a turn connecting an unexpected N-terminal α-helix to the first transmembrane helix, TM1, and a long cytosolic loop bearing the dibasic motif and connecting TM1 to TM2. These results provide the first detailed experimental structural framework for a better understanding of p7 processing, oligomerization, and ion channel gating mechanism.

Indexed as

Models, MolecularAmilorideAmino Acid MotifsCircular DichroismHepacivirusIon ChannelsLipid BilayersNuclear Magnetic Resonance, BiomolecularProtein MultimerizationProtein Structure, QuaternaryViral ProteinsViroporin Proteins5-(N,N-hexamethylene)amilorideAmilorideIon ChannelsLipid Bilayersp7 protein, Hepatitis C virusViral ProteinsViroporin Proteins

Identifiers

PMID20667830
PMCPMC2951219
OpenAlexW1970408170

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.