Evidence map›Paper›PMID 20663923›Full record

ArticleHuman molecular genetics2010

A genome-wide scan for common alleles affecting risk for autism.

Richard Anney, Lambertus Klei, Dalila Pinto, Regina Regan, Judith Conroy, Tiago R Magalhaes, Catarina Correia, Brett S Abrahams, Nuala Sykes, Alistair T Pagnamenta and 156 more

Open access · hybridAbstract read
In one paragraph

Article in Human molecular genetics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 332 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
332citing papers in PubMed, 4 pooled it
30.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

332 citing papers in PubMed, 4 syntheses or guidelines pooled it, 587 citations in OpenAlex.

  1. Pooled it
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  5. Trial
  6. Trial
  7. Article
  8. International journal of molecular sciences · 2026
    Article
  9. Review
  10. Article
  11. Sialylation in the nervous system: Functions and mechanisms.The Journal of biological chemistry · 2026
    Review
  12. Exploring the PLD1-tau interaction in Frontotemporal Dementia.bioRxiv : the preprint server for biology · 2026
    Article
  13. Review
  14. Review
  15. Review
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  18. Article
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272 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

166 authors at 20 institutions in 12 countries.

Richard AnneyDepartment of Psychiatry, School of Medicine, Trinity College, Dublin 8, Ireland.
Lambertus Klei
Dalila Pinto
Regina Regan
Judith Conroy
Tiago R Magalhaes
Catarina Correia
Brett S Abrahams
Nuala Sykes
Alistair T Pagnamenta
Joana Almeida
Elena Bacchelli
Anthony J Bailey
Gillian Baird
Agatino Battaglia
Tom Berney
Nadia Bolshakova
Sven Bölte
Patrick F Bolton
Thomas Bourgeron
Sean Brennan
Jessica Brian
Andrew R Carson
Guillermo Casallo
Jillian Casey
Su H Chu
Lynne Cochrane
Christina Corsello
Emily L Crawford
Andrew Crossett
Geraldine Dawson
Maretha de Jonge
Richard Delorme
Irene Drmic
Eftichia Duketis
Frederico Duque
Annette Estes
Penny Farrar
Bridget A Fernandez
Susan E Folstein
Eric Fombonne
Christine M Freitag
John Gilbert
Christopher Gillberg
Joseph T Glessner
Jeremy Goldberg
Jonathan Green
Stephen J Guter
Hakon Hakonarson
Elizabeth A Heron
Matthew Hill
Richard Holt
Jennifer L Howe
Gillian Hughes
Vanessa Hus
Roberta Igliozzi
Cecilia Kim
Sabine M Klauck
Alexander Kolevzon
Olena Korvatska
Vlad Kustanovich
Clara M Lajonchere
Janine A Lamb
Magdalena Laskawiec
Marion Leboyer
Ann Le Couteur
Bennett L Leventhal
Anath C Lionel
Xiao-Qing Liu
Catherine Lord
Linda Lotspeich
Sabata C Lund
Elena Maestrini
William Mahoney
Carine Mantoulan
Christian R Marshall
Helen McConachie
Christopher J McDougle
Jane McGrath
William M McMahon
Nadine M Melhem
Alison Merikangas
Ohsuke Migita
Nancy J Minshew
Ghazala K Mirza
Jeff Munson
Stanley F Nelson
Carolyn Noakes
Abdul Noor
Gudrun Nygren
Guiomar Oliveira
Katerina Papanikolaou
Jeremy R Parr
Barbara Parrini
Tara Paton
Andrew Pickles
Joseph Piven
David J Posey
Annemarie Poustka
Fritz Poustka
Aparna Prasad
Jiannis Ragoussis
Katy Renshaw
Jessica Rickaby
Wendy Roberts
Kathryn Roeder
Bernadette Roge
Michael L Rutter
Laura J Bierut
John P Rice
Jeff Salt
Katherine Sansom
Daisuke Sato
Ricardo Segurado
Lili Senman
Naisha Shah
Val C Sheffield
Latha Soorya
Inês Sousa
Vera Stoppioni
Christina Strawbridge
Raffaella Tancredi
Katherine Tansey
Bhooma Thiruvahindrapduram
Ann P Thompson
Susanne Thomson
Ana Tryfon
John Tsiantis
Herman Van Engeland
John B Vincent
Fred Volkmar
Simon Wallace
Kai Wang
Zhouzhi Wang
Thomas H Wassink
Kirsty Wing
Kerstin Wittemeyer
Shawn Wood
Brian L Yaspan
Danielle Zurawiecki
Lonnie Zwaigenbaum
Catalina Betancur
Joseph D Buxbaum
Rita M Cantor
Edwin H Cook
Hilary Coon
Michael L Cuccaro
Louise Gallagher
Daniel H Geschwind
Michael Gill
Jonathan L Haines
Judith Miller
Anthony P Monaco
John I Nurnberger
Andrew D Paterson
Margaret A Pericak-Vance
Gerard D Schellenberg
Stephen W Scherer
James S Sutcliffe
Peter Szatmari
Astrid M Vicente
Veronica J Vieland
Ellen M Wijsman
Bernie Devlin
Sean Ennis
Joachim Hallmayer
Trinity College Dublin · IESickKids Foundation · CAUniversity of Oxford · GBUniversity of Toronto · CAIcahn School of Medicine at Mount Sinai · USMcMaster University · CAUniversity College Dublin · IEUniversity of Pittsburgh · USVanderbilt University · USFondazione Stella Maris · ITGoethe University Frankfurt · DEHospital for Sick Children · CANewcastle University · GBUniversity of Illinois Chicago · USCarnegie Mellon University · USCentre for Human Genetics · GBChildren's Hospital of Philadelphia · USIndiana University School of MedicineUniversity of California, Los Angeles · USUniversity of Michigan–Ann Arbor · US

Funding

Subject CollectionU10AA008401 · NIAAA · SUNY DOWNSTATE MEDICAL CENTER · PI Sarah Hartz · 1989 to 2026
$162.7M
Understanding Repetitive Behavior in AutismP50HD055784 · NICHD · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI BOOKHEIMER, SUSAN Y · 2007 to 2021
$32.0M
JH/CIDR Genotyping for Genome-Wide Association StudiesU01HG004438 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID · 2007 to 2011
$24.2M
The Collaborative Genetic Study of Nicotine DependenceP01CA089392 · NCI · WASHINGTON UNIVERSITY · PI BIERUT, LAURA J. · 2001 to 2012
$17.3M
A Comprehensive Approach to Identification of Autism Susceptibility GenesR01MH081754 · NIMH · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI GESCHWIND, DANIEL H · 2008 to 2012
$14.6M
USE OF DNA PROBE FOR CHOLINERGIC AND NON-CHOLINERGIC MG ANTIGENP01NS026630 · NINDS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI PERICAK-VANCE, MARGARET A. · 1989 to 2009
$12.6M
UW Autism Center of ExcellenceP50HD055782 · NICHD · UNIVERSITY OF WASHINGTON · PI DAWSON, GERALDINE · 2007 to 2011
$11.0M
TRANS STUDIES OF COGNITIVE,AFFECTIVE/NEUROCHEMICAL PROCESSES UNDERLYING INSISTENCP50HD055751 · NICHD · UNIVERSITY OF ILLINOIS AT CHICAGO · PI SWEENEY, JOHN A · 2007 to 2011
$9.5M
SENSORY, MOTOR, AND EXECUTIVE DEFICITS IN AUTISMU19HD035469 · NICHD · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MINSHEW, NANCY J · 2002 to 2006
$8.6M
MANAGEMENT/STATISTICS COREU54MH066673 · NIMH · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI SCHMEIDLER, JAMES · 2003 to 2007
$7.7M
Genome Wide Association Coordinating CenterU01HG004446 · NHGRI · UNIVERSITY OF WASHINGTON · PI WEIR, BRUCE S. · 2007 to 2011
$6.6M
Program in NeurogenomicsT32MH065215 · NIMH · VANDERBILT UNIVERSITY · PI ROGER J COLBRAN · 2002 to 2026
$6.4M
Autism Speaks AS7462CIHRHoward Hughes Medical InstituteMedical Research Council G0601030NCI NIH HHS P01 CA089392NHGRI NIH HHS HHSN268200782096CNHGRI NIH HHS U01 HG004422NHGRI NIH HHS U01 HG004438NHGRI NIH HHS U01 HG004446NIAAA NIH HHS U10 AA008401NICHD NIH HHS HD055751NICHD NIH HHS HD055782NICHD NIH HHS HD055784NICHD NIH HHS HD35465NICHD NIH HHS P01 HD035465NICHD NIH HHS P50 HD055751NICHD NIH HHS P50 HD055782NICHD NIH HHS P50 HD055784NICHD NIH HHS U19 HD035469NIDA NIH HHS R01 DA013423NIDA NIH HHS R01 DA019963NIMH NIH HHS K01 MH077930NIMH NIH HHS MH057881NIMH NIH HHS MH061009NIMH NIH HHS MH06359NIMH NIH HHS MH066673NIMH NIH HHS MH077930NIMH NIH HHS MH080647NIMH NIH HHS MH081754NIMH NIH HHS MH52708NIMH NIH HHS MH55284NIMH NIH HHS MH66766NIMH NIH HHS R01 MH055284NIMH NIH HHS R01 MH057881NIMH NIH HHS R01 MH061009NIMH NIH HHS R01 MH080647NIMH NIH HHS R01 MH081754NIMH NIH HHS R37 MH057881NIMH NIH HHS T32 MH065215NIMH NIH HHS U10 MH066766NIMH NIH HHS U54 MH066673NINDS NIH HHS NS026630NINDS NIH HHS NS042165NINDS NIH HHS NS049261NINDS NIH HHS P01 NS026630NINDS NIH HHS R01 NS042165NINDS NIH HHS R01 NS049261Wellcome Trust 075491/Z/04 UK
6 · The paper itself

Abstract

Although autism spectrum disorders (ASDs) have a substantial genetic basis, most of the known genetic risk has been traced to rare variants, principally copy number variants (CNVs). To identify common risk variation, the Autism Genome Project (AGP) Consortium genotyped 1558 rigorously defined ASD families for 1 million single-nucleotide polymorphisms (SNPs) and analyzed these SNP genotypes for association with ASD. In one of four primary association analyses, the association signal for marker rs4141463, located within MACROD2, crossed the genome-wide association significance threshold of P < 5 × 10(-8). When a smaller replication sample was analyzed, the risk allele at rs4141463 was again over-transmitted; yet, consistent with the winner's curse, its effect size in the replication sample was much smaller; and, for the combined samples, the association signal barely fell below the P < 5 × 10(-8) threshold. Exploratory analyses of phenotypic subtypes yielded no significant associations after correction for multiple testing. They did, however, yield strong signals within several genes, KIAA0564, PLD5, POU6F2, ST8SIA2 and TAF1C.

Indexed as

Genetic Predisposition to DiseaseGenome-Wide Association StudyPolymorphism, Single NucleotideAllelesAutistic DisorderDatabases, GeneticDNA Copy Number VariationsGenetic VariationGenome, HumanGenotypeHumansRisk FactorsWhite People

Identifiers

PMID20663923
PMCPMC2947401
OpenAlexW2152157708

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.