Evidence map›Paper›PMID 20659892›Full record

ArticleThe Journal of biological chemistry2010

The Arabidopsis peroxisomal ABC transporter, comatose, complements the Saccharomyces cerevisiae pxa1 pxa2Delta mutant for metabolism of long-chain fatty acids and exhibits fatty acyl-CoA-stimulated ATPase activity.

Yvonne Nyathi, Carine De Marcos Lousa, Carlo W van Roermund, Ronald J A Wanders, Barbara Johnson, Stephen A Baldwin, Frederica L Theodoulou, Alison Baker

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 73 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Jasmonic Acid Signaling and Molecular Crosstalk with Other Phytohormones.International journal of molecular sciences · 2021
    Review
  7. Article
  8. Article
  9. Peroxisomes: A New Hub for Metabolic Engineering in Yeast.Frontiers in bioengineering and biotechnology · 2021
    Article
  10. Article
  11. Article
  12. PheophorbidePlant physiology · 2020
    Article
  13. Article
  14. Article
  15. Article
  16. Plant peroxisomal solute transporter proteins.Journal of integrative plant biology · 2019
    Review
  17. JASSY, a chloroplast outer membrane protein required for jasmonate biosynthesis.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  18. Review
  19. AProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 3 countries.

Yvonne NyathiFaculty of Biological Sciences, University of Leeds, Centre for Plant Sciences, Leeds LS2 9JT, United Kingdom.
Carine De Marcos Lousa
Carlo W van Roermund
Ronald J A Wanders
Barbara Johnson
Stephen A Baldwin
Frederica L Theodoulou
Alison Baker
University of Leeds · GBAcademic Medical Center · NLDepartment of Plant Biology · USRothamsted Research · GBUniversity of Amsterdam · NL

Funding

Biotechnology and Biological Sciences Research Council BB/D524875/1Biotechnology and Biological Sciences Research Council BB/F007108/1Biotechnology and Biological Sciences Research Council BB/F007299/1Biotechnology and Biological Sciences Research Council BBS/E/C/00004948
6 · The paper itself

Abstract

The Arabidopsis ABC transporter Comatose (CTS; AtABCD1) is required for uptake into the peroxisome of a wide range of substrates for β-oxidation, but it is uncertain whether CTS itself is the transporter or if the transported substrates are free acids or CoA esters. To establish a system for its biochemical analysis, CTS was expressed in Saccharomyces cerevisiae. The plant protein was correctly targeted to yeast peroxisomes, was assembled into the membrane with its nucleotide binding domains in the cytosol, and exhibited basal ATPase activity that was sensitive to aluminum fluoride and abrogated by mutation of a conserved Walker A motif lysine residue. The yeast pxa1 pxa2Δ mutant lacks the homologous peroxisomal ABC transporter and is unable to grow on oleic acid. Consistent with its exhibiting a function in yeast akin to that in the plant, CTS rescued the oleate growth phenotype of the pxa1 pxa2Δ mutant, and restored β-oxidation of fatty acids with a range of chain lengths and varying degrees of desaturation. When expressed in yeast peroxisomal membranes, the basal ATPase activity of CTS could be stimulated by fatty acyl-CoAs but not by fatty acids. The implications of these findings for the function and substrate specificity of CTS are discussed.

Indexed as

ATP-Binding Cassette TransportersSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsAdenosine TriphosphatasesAmino Acid MotifsArabidopsisArabidopsis ProteinsFatty AcidsGenetic Complementation TestOxidation-ReductionSubstrate SpecificityAdenosine TriphosphatasesArabidopsis ProteinsAt4g39850 protein, ArabidopsisATP-Binding Cassette TransportersFatty AcidsPXA1 protein, S cerevisiaePXA2 protein, S cerevisiaeSaccharomyces cerevisiae Proteins

Identifiers

PMID20659892
PMCPMC2943281
OpenAlexW2135192677

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.